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Plant Physiology Cover Image for Volume 170, Issue 4
Volume 170, Issue 4
April 2016
ISSN 0032-0889
EISSN 1532-2548

Volume 170, Issue 4, April 2016

ON THE INSIDE

Peter V. Minorsky
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1897–1898, https://doi.org/10.1104/pp.16.00394

EDITORIAL

Jaime A. Teixeira da Silva and Michael R. Blatt
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1899–1902, https://doi.org/10.1104/pp.15.01939

TOPICAL REVIEW

Alexander V. Ruban
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1903–1916, https://doi.org/10.1104/pp.15.01935

Knowledge about the mechanism of non-photochemical chlorophyll fluorescence quenching adds to an understanding of its effectiveness at protecting plants from photodamage.

BREAKTHROUGH TECHNOLOGIES

Noel J. Sauer and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1917–1928, https://doi.org/10.1104/pp.15.01696

Precise genome editing enables an herbicide tolerance trait in a commercially relevant crop by improving the outcome of DNA double strand break repair using single-stranded oligonucleotides.

RESEARCH REPORT

Han Hu and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1929–1934, https://doi.org/10.1104/pp.15.01327

A software tool incorporating a range of experimental and data analysis choices in a sequencing-based forward genetics study aids in the design of an optimal procedure for gene identification.

Articles

BIOCHEMISTRY AND METABOLISM

Dylan Levac and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1935–1944, https://doi.org/10.1104/pp.15.01813

Tocopherol-like methyltransferases in the Apocynaceae family of angiosperms are monoterpenoid indole alkaloid (MIA)-N-methyltransferases that contribute to chemical and biological diversity of the plants.

Elisa Vanzo and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1945–1961, https://doi.org/10.1104/pp.15.01842

Isoprene emission modulates stress-induced NO production and S-nitrosylation pattern in poplar.

Edwin R. Lampugnani and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1962–1974, https://doi.org/10.1104/pp.15.02005

A type II transmembrane protein from tobacco pollen is associated with (1,5)-α-arabinan synthesis.

Shai I. Saroussi and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1975–1988, https://doi.org/10.1104/pp.15.02014

A NADPH dehydrogenase is critical for balancing electron flow between energy-dissipating and energy-generating pathways during the acclimation to photoautotrophic nitrogen deprivation.

Nadia Shakoor and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1989–1998, https://doi.org/10.1104/pp.15.01971

Genome-wide association analysis identifies novel alleles controlling seed element accumulation.

Nan Jiang and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 1999–2023, https://doi.org/10.1104/pp.15.01777

A xylan synthase engages an unusual regulatory mechanism linking ER complex assembly with forward trafficking.

CELL BIOLOGY

Daisuke Takagi and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2024–2039, https://doi.org/10.1104/pp.15.01572

Suppressing a chloroplast oxidoreductase decreases carbon utilization during the night, and inhibits plant growth.

Janina Apitz and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2040–2051, https://doi.org/10.1104/pp.15.01945

The protease post-translationally fine-tunes a key enzyme in the synthesis of 5-Aminolevulinic acid during photoperiodic growth.

Satinder K. Gidda and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2052–2071, https://doi.org/10.1104/pp.15.01977

Lipid droplet-associated proteins play different roles in various physiological contexts and during plant stress responses.

ECOPHYSIOLOGY AND SUSTAINABILITY

Annie Deslauriers and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2072–2084, https://doi.org/10.1104/pp.15.01525

During wood formation, water availability is the most important factor for cell production, while carbon is more important to sustain the differentiation of living cells.

Markus Nolf and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2085–2094, https://doi.org/10.1104/pp.15.01664

Small herbaceous species are vulnerable to water stress but adjusted to their habitat conditions and internally coordinated to avoid hydraulic failure.

GENES, DEVELOPMENT AND EVOLUTION

Zhu-Qing Shao and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2095–2109, https://doi.org/10.1104/pp.15.01487

Three ancient classes of genes encoding leucine-rich repeat proteins diverged into at least 23 lineages in the common ancestor of angiosperm, from which all current gene repertoires evolved through dynamic expansion.

Yunlong Wang and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2110–2123, https://doi.org/10.1104/pp.15.01949

The White Panicle1 gene, encoding a Val-tRNA synthetase, plays an essential role in early chloroplast development.

Daniel P. Woods and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2124–2135, https://doi.org/10.1104/pp.15.01279

Despite widespread vernalization responsiveness in the grass subfamily Pooideae, the flowering repressor VERNALIZATION2 evolved more recently in core members of this subfamily.

Xiaodong Chen and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2136–2145, https://doi.org/10.1104/pp.15.01733

Wounding induces expression of the NAC1 transcription factor that affects root tip emergence during de novo regeneration of adventitious root.

Zamira Abraham and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2146–2158, https://doi.org/10.1104/pp.16.00092

Two barley transcription factors interact to serve as a gene expression switch at key stages of seed development: maturation and germination.

Lae-Hyeon Cho and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2159–2171, https://doi.org/10.1104/pp.15.01723

Homodimerization of an inducer of florigen gene expression, Ehd1, promotes flowering, but can be interrupted by the response regulator OsRR1.

Philippa Borrill and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2172–2186, https://doi.org/10.1104/pp.15.01667

expVIP is an adaptable platform to create an integrated gene expression interface for any species with a transcriptome assembly.

Rik Kooke and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2187–2203, https://doi.org/10.1104/pp.15.00997

Integration of genome wide association mapping and genomic prediction increases resolution of genetic architecture and uncovers missing heritability of quantitative traits in plants.

Senjuti Sinharoy and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2204–2217, https://doi.org/10.1104/pp.15.01853

A Cystathionine-β-Synthase like protein, exclusively expressed during Medicago-Rhizobium symbiosis, is required for infection thread propagation and bacterial endocytosis.

Anderson Tadeu Silva and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2218–2231, https://doi.org/10.1104/pp.15.01704

A seed-to-seedling gene coexpression network reveals homeodomain leucine zipper I transcription factor AtHB13 as a novel key regulator affecting primary root length during late seedling establishment.

Tesfamichael H. Kebrom and John E. Mullet
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2232–2250, https://doi.org/10.1104/pp.16.00014

Buds of a phytochrome B mutant express high levels of the flowering regulators TFL1, TPPI, and gibberellic acid oxidase and become dormant, whereas wild-type buds with higher cytokinin/sugar induce a SWEET transporter, cell wall invertases, and grow into tillers.

Erik M. Solhaug and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2251–2263, https://doi.org/10.1104/pp.16.00052

An allopolyploid’s level of hybrid vigor may depend on environmental and ecological conditions.

MEMBRANES, TRANSPORT AND BIOENERGETICS

Xue-Ping Wang and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2264–2277, https://doi.org/10.1104/pp.15.01493

Protein kinase CIPK23 and channel subunit AtKC1 are both crucial for the modulation of potassium channel AKT1 as well as for the response to low-potassium stress.

SIGNALING AND RESPONSE

Nielda K.G. Melo and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2278–2294, https://doi.org/10.1104/pp.16.00023

Light-evoked cotyledon greening and chloroplast differentiation in deetiolating tomato seedlings are orchestrated by regulatory feedback loops involving phytochromes, nitric oxide, auxins, and ethylene.

Quirin L. Ranftl and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2295–2311, https://doi.org/10.1104/pp.15.01556

Six Arabidopsis LLM-domain B-GATA transcription factors control greening, hypocotyl elongation, phyllotaxy, floral organ initiation, branching, flowering time and senescence.

Tatiana Vernié and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2312–2324, https://doi.org/10.1104/pp.15.01694

The E3 ubiquitin ligase PUB1 is a common negative regulator for both rhizobial and arbuscular mycorrhizal symbioses and interacts with a key receptor kinase.

Pierre Pétriacq and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2325–2339, https://doi.org/10.1104/pp.15.00551

A plant-pathogenic fungus alters its infection strategy, depending on initial spore density on the leaf surface and intensity of the corresponding plant immune.

Yanwen Yu and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2340–2350, https://doi.org/10.1104/pp.15.01724

Salt stress and ethylene antagonistically regulate the nucleocytoplasmic partitioning of the COP1 E3 ligase, thereby suppressing seed germination.

Thikra Dawood and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2351–2364, https://doi.org/10.1104/pp.15.00773

Soil flooding reactivates dormant adventitious root primordia via ethylene-induced reduction in ABA level.

Huacai Wang and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2365–2377, https://doi.org/10.1104/pp.15.01283

Micro-RNA miR444 and its MADS-box targets directly alter RNA-dependent RNA polymerase transcription in antiviral defense.

Anjil Kumar Srivastava and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2378–2391, https://doi.org/10.1104/pp.15.01530

The OsOTS1 SUMO protease acts in the nucleus to promote root growth and confer salt tolerance.

Yuan-Bao Li and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2392–2406, https://doi.org/10.1104/pp.15.01930

The root apoplast secretome of Gossypium barbadense actively changes upon infection, and a thioredoxin plays an important role in apoplastic ROS balance.

Matthias R. Zimmermann and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2407–2419, https://doi.org/10.1104/pp.15.01736

Feeding caterpillars trigger various types of electrophysiological reactions with diverse voltage patterns that are specific for plant species.

G. Alex Mason and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2420–2431, https://doi.org/10.1104/pp.15.01928

Perturbation of AGO1, a key enzyme in microRNA metabolism, sensitizes seedlings to stochastic instances of cell death due to up-regulated jasmonate signaling.

André Schmiesing and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2432–2443, https://doi.org/10.1104/pp.16.00031

Repression of the jasmonic acid pathway by insect eggs is associated with degradation of transcription factors that control defense gene activation.

María Lorena Falcone Ferreyra and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2444–2460, https://doi.org/10.1104/pp.16.00033

A programmed cell death protein, by its interaction with histone acetyltransferases, has an important role during DNA damage responses induced by UV-B radiation in Arabidopsis.

Sotirios Fragkostefanakis and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2461–2477, https://doi.org/10.1104/pp.15.01913

A heat stress transcription factor is involved in tomato pollen thermotolerance, contributing to stress responses as well as the abundance of chaperones in the priming program activated during microsporogenesis.

Xiaoli Li and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2478–2493, https://doi.org/10.1104/pp.15.01827

Two transcription factors positively regulate Fe homeostasis by activating the transcription of the Ib subgroup bHLH genes.

SYSTEMS AND SYNTHETIC BIOLOGY

Eun Yu Kim and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2494–2510, https://doi.org/10.1104/pp.16.00165

A small rubber particle protein homolog plays dual roles as positive factors in post-germination growth and the drought stress tolerance response

Mercedes Diaz-Mendoza and others
Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2511–2524, https://doi.org/10.1104/pp.15.01944

Over-expressing or silencing proteases or their inhibitors alter the metabolite composition of the grain and modify the germination process in barley

CORRECTION

Plant Physiology, Volume 170, Issue 4, April 2016, Pages 2525–2526, https://doi.org/10.1104/pp.16.00255
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