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Plant Physiology Cover Image for Volume 170, Issue 3
Volume 170, Issue 3
March 2016
ISSN 0032-0889
EISSN 1532-2548

Volume 170, Issue 3, March 2016

ON THE INSIDE

Peter V. Minorsky
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1169–1170, https://doi.org/10.1104/pp.16.00223

EDITORIAL

Michael R. Blatt
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1171–1173, https://doi.org/10.1104/pp.16.00160

COMMENTARY

Yuling Jiao
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1174–1175, https://doi.org/10.1104/pp.16.00181

BREAKTHROUGH TECHNOLOGIES

Dagmar van Dusschoten and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1176–1188, https://doi.org/10.1104/pp.15.01388

Magnetic resonance imaging (MRI) enables nondestructive 3D imaging and quantification of roots or root system architecture in soil and is suited for automated and routine measurements of root development.

Takashi Hotta and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1189–1205, https://doi.org/10.1104/pp.15.01173

New methods allow for efficient affinity purification of polymerization-competent tubulin from tobacco and Arabidopsis cell cultures.

UPDATE

SIGNALING AND RESPONSE

Silvia Melina Velasquez and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1206–1215, https://doi.org/10.1104/pp.15.01863

Multiple modes of auxin action are integrated as a crucial growth regulator in the single cell model of the root hair.

Articles

BIOCHEMISTRY AND METABOLISM

Amit K. Bajhaiya and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1216–1234, https://doi.org/10.1104/pp.15.01907

A transcription factor induced by phosphate starvation regulates metabolism genes to enhance starch biosynthesis in microalgae.

Philip R. Young and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1235–1254, https://doi.org/10.1104/pp.15.01775

Grapevine responds to increased exposure in the bunch zone by up-regulating photoprotective carotenoids in the early developmental stages and volatile terpenoids in the later ripening stages of the berries in a proposed mechanism of antioxidant homeostasis maintenance.

Yoshiko Toyosawa and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1255–1270, https://doi.org/10.1104/pp.15.01232

Deficiency of starch synthases IIIa and IVb, which elongate the long chains of amylopectin, drastically changes starch granule morphology from polyhedral to spherical in rice endosperm.

Bilal Cakir and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1271–1283, https://doi.org/10.1104/pp.15.01911

Rice lines with enhanced ADPglc synthesis and import into amyloplasts reveal additional barriers within the stroma that restrict maximum carbon flow into starch.

Elke Ströher and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1284–1299, https://doi.org/10.1104/pp.15.01308

The Fe-S binding monothiol GrxS15 is localized to mitochondria; its absence slows growth and respiration and increases arsenic susceptibility.

César Botella and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1300–1314, https://doi.org/10.1104/pp.15.01557

The ALA10 phospholipid flippase reduces phosphatidylcholine desaturation and stimulates galactolipid-tophosphatidylcholine ratio in photosynthetic tissues.

Da-Gang Hu and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1315–1330, https://doi.org/10.1104/pp.15.01333

An MYB transcription factor influences organ coloration and acidity by activating the expression of the genes encoding vacuolar proton pump subunits as well as anthocyanin transporters and malate transporters.

Anthony L. Schilmiller and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1331–1344, https://doi.org/10.1104/pp.15.01348

Acylsugar acylhydrolases are carboxylesterases that catalyze the hydrolysis of specific acyl chains from acylsugars found in trichomes.

Sylvain Aubry and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1345–1357, https://doi.org/10.1104/pp.15.01203

Transcript profiling from closely related C3 and C4 species identifies a core guard cell signature as well as two patterns of gene expression associated with C4 photosynthesis across the C4 leaf.

Richard Sibout and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1358–1366, https://doi.org/10.1104/pp.15.01877

Arabidopsis lignins, which are genetically p-coumaroylated up to the grass lignin level, display dramatic structural changes that make them more amenable to solubilization in alkali at room temperature.

Julien Sechet and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1367–1380, https://doi.org/10.1104/pp.15.01312

During germination, defective xylose trimming alters xyloglucan anisotropic localization in cell walls during hypocotyl elongation and decreases endosperm resistance to radicle protrusion

CELL BIOLOGY

Jing Yue and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1381–1397, https://doi.org/10.1104/pp.15.01729

A type 1 protein phosphatase, TOPP4, participates in the phyB signaling pathway by dephosphorylating PIF5 and controlling the stability of PIF5 in seedlings.

Yue Rui and Charles T. Anderson
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1398–1419, https://doi.org/10.1104/pp.15.01066

Sufficient cellulose and xyloglucan production controls proper guard cell expansion and allows for cellulose reorganization as stomata open or close.

Noriko Inada and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1420–1434, https://doi.org/10.1104/pp.15.01265

The nuclear localization of subclass I actin-depolymerizing factor is critical for the susceptibility against an adapted powdery mildew.

Keina Monda and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1435–1444, https://doi.org/10.1104/pp.15.01450

The Arabidopsis tetraploid ecotype, Me-0, overcomes the handicap of stomatal opening that is typical for tetraploid plants and achieves a high stomatal conductance.

Ryo Matsushima and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1445–1459, https://doi.org/10.1104/pp.15.01811

Starch grain size is an important factor for industrial applications of starch and is affected by a novel amyloplast membrane protein.

ECOPHYSIOLOGY AND SUSTAINABILITY

Mickaël Durand and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1460–1479, https://doi.org/10.1104/pp.15.01926

Mild water deficit enhances C export to the roots and modifies root architecture, with a subset of sucrose transporters involved in both shoot and roots.

Daniel H. Chitwood and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1480–1491, https://doi.org/10.1104/pp.15.01825

Changes in climate alter specific shape features of grapevine leaves, regardless of evolutionary or developmental context.

GENES, DEVELOPMENT AND EVOLUTION

Songkui Cui and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1492–1503, https://doi.org/10.1104/pp.15.01786

Isolation and analysis of parasitic plant mutants with defects in haustorial hair development shows that these specialized root hairs are important for tight interactions with the host plant roots.

Dénes Dudits and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1504–1523, https://doi.org/10.1104/pp.15.01679

Enlarged leaf size, stem diameter, and root system of autotetraploid energy willows are associated with changes in hormonal status and the efficiency of photosynthesis.

Jinghua Zhang and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1524–1534, https://doi.org/10.1104/pp.15.01510

A regulatory region consisting of duplicated motifs activates gene expression in plant male gamete.

Alice Lunardon and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1535–1548, https://doi.org/10.1104/pp.15.01205

Agronomically realistic, long-term drought stress mis-regulates some miRNAs and induces the down-regulation of a set of small RNA loci in the maize leaf.

Runxuan Zhang and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1549–1565, https://doi.org/10.1104/pp.15.01690

Gene transcript profiles during barley endosperm cellularization reveal functional modules, coexpression networks, and regulatory genes, all of which align with cell wall changes in developing grain.

Walid Mahrez and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1566–1577, https://doi.org/10.1104/pp.15.01744

Profiling of histone H3 modifications by MS/MS identified the H3K36ac histone modification, which is introduced at the first 500 bp of active Arabidopsis genes and is conserved in gymnosperms and angiosperms.

Xiang Yu Zhao and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1578–1594, https://doi.org/10.1104/pp.15.01216

A wheat microRNA promotes heading by negatively regulating expression of homologs of the clock gene TOC1.

Iris Fischer and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1595–1610, https://doi.org/10.1104/pp.15.01470

Phylogenetic analysis of leucine-rich repeat-containing receptor-like kinases demonstrates the dynamic nature of gene duplication, loss, and selection in this family.

Jakyung Yi and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1611–1623, https://doi.org/10.1104/pp.15.01561

Timely production of superoxides is essential for initiation of tapetum degeneration in rice.

Luis Matías-Hernández and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1624–1639, https://doi.org/10.1104/pp.15.01309

TEMPRANILLO repress epidermal trichome initiation by controlling gibberellin accumulation in the mesophyll as well as by acting as link between GA and CK signaling in the epidermis.

Hagen Reinhardt and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1640–1654, https://doi.org/10.1104/pp.15.01635

Aquaporins located in the vacuolar membrane contribute to the proper development of lateral roots.

Julia C. van Campen and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1655–1674, https://doi.org/10.1104/pp.15.01624

A combined transcriptomic and physiological analysis of rice leaf development identifies the stage (P3/P4 transition) when photosynthetic competence is first established.

Xue Gong and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1675–1683, https://doi.org/10.1104/pp.15.01501

The transcription factor SEU promotes middle cortex formation through a network of transcription factor interactions.

MEMBRANES, TRANSPORT AND BIOENERGETICS

Yong-Liang Han and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1684–1698, https://doi.org/10.1104/pp.15.01377

Nitrogen use efficiency is mediated by vacuolar nitrate sequestration capacity in roots

SIGNALING AND RESPONSE

Yanjie Xie and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1699–1713, https://doi.org/10.1104/pp.15.01550

The heme oxygenase HY1 functions negatively and acts upstream in drought-induced ABA signaling, and this cascade depends on RbohD-derived ROS production in the regulation of stomatal closure.

Jian Liu and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1714–1731, https://doi.org/10.1104/pp.15.00744

Phosphatidylinositol 3-kinase promotes proton pump activation, resulting in vacuolar acidification and stomatal closing, thereby delaying methyl jasmonate-induced leaf senescence.

Mingchun Liu and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1732–1744, https://doi.org/10.1104/pp.15.01859

A small subset of ethylene response factor genes emerge as main actors in controlling fruit ripening via both ethylene-dependent and RIN/NOR-mediated mechanisms.

Quentin Bruggeman and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1745–1756, https://doi.org/10.1104/pp.15.01872

Chloroplasts modulate programmed cell death via at least two different pathways: photosynthetic activity is required for cell death while a retrograde signal negatively regulates cell death and plant innate immunity.

Leonard Shumbe and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1757–1771, https://doi.org/10.1104/pp.15.01546

The AGC kinase OXI1 regulates 1O2-induced cell death in plants exposed to excess light energy.

Pil Joong Chung and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1772–1782, https://doi.org/10.1104/pp.15.01188

MiR163 targets PXMT1 transcripts at the early stage of light responses to promote seed germination and root development.

Peng Yu and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1783–1798, https://doi.org/10.1104/pp.15.01885

Root type-specific lateral root branching and pericycle-specific transcriptome reprogramming highlight diverse foraging strategies of maize roots in heterogeneous nitrate environments.

Jie Liu and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1799–1816, https://doi.org/10.1104/pp.15.01784

A conserved Mediator complex subunit physically interacts with the transcription factor ETHYLENE INSENSITIVE3-LIKE1 (TaEIL1) to promote ETHYLENE RESPONSE FACTOR1 (TaERF1) expression and repress powdery mildew resistance.

Luca Tadini and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1817–1830, https://doi.org/10.1104/pp.15.02033

The gene product associated with a so-called Genomes UNcoupled (gun) mutant interacts with proteins involved in plastid protein homeostasis.

David De Vleesschauwer and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1831–1847, https://doi.org/10.1104/pp.15.01515

A growth-inhibiting protein boosts the action of the defense-related plant hormones salicylic acid and jasmonic acid, rendering rice plants more resistant to pathogen attack.

SYSTEMS AND SYNTHETIC BIOLOGY

Joke Baute and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1848–1867, https://doi.org/10.1104/pp.15.01883

Combining in-depth phenotyping with transcript profiling in maize recombinant inbred lines untangles the genetic control of complex traits.

Fei Cai and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1868–1877, https://doi.org/10.1104/pp.15.01822

Synthetic carboxysome shells, containing all of the key component proteins provide a platform for fundamental studies of shell permeability and metabolic modeling of organelle function.

Colin Ruprecht and others
Plant Physiology, Volume 170, Issue 3, March 2016, Pages 1878–1894, https://doi.org/10.1104/pp.15.01281

Gene module multiplication drives pathway expansion in plants.

RETRACTION

Plant Physiology, Volume 170, Issue 3, March 2016, Page 1895, https://doi.org/10.1104/pp.16.00125
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