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Plant Physiology Cover Image for Volume 171, Issue 1
Volume 171, Issue 1
May 2016
ISSN 0032-0889
EISSN 1532-2548

Volume 171, Issue 1, May 2016

ON THE INSIDE

Peter V. Minorsky
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 1–2, https://doi.org/10.1104/pp.16.00583

BREAKTHROUGH TECHNOLOGIES

Nicholas J. B. Brereton and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 3–24, https://doi.org/10.1104/pp.16.00090

Shared metatranscriptomic responses to petroleum hydrocarbon contamination in ten cultivars of field-grown willow expose native and foreign organism gene expression of effective phytoremediation.

Lisa Maria Dersch and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 25–41, https://doi.org/10.1104/pp.15.01217

Stable isotopic labeling combined with combustion isotope ratio mass spectrometry elucidates metabolic properties of whole plants under strictly controlled physiological conditions.

Gonzalo H. Villarino and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 42–61, https://doi.org/10.1104/pp.15.01845

Transcriptional profiles of spatially and temporally restricted cell populations from the Arabidopsis gynoecium reveals the meristematic nature of the gynoecial medial domain.

RESEARCH REPORTS

Giorgio Perrella and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 62–70, https://doi.org/10.1104/pp.15.01760

A conserved ancestral domain of the intrinsically disordered protein Histone Deacetylase Complex 1 (HDC1) binds H3-binding proteins and H1 variants.

Sudip Saha and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 71–81, https://doi.org/10.1104/pp.15.01962

Gatekeeper tyrosine phosphorylation of symbiosis receptor kinase is essential for guiding the infection threads through the epidermal-cortical barrier towards the nodule primordia during progress of root nodule symbiosis.

Articles

BIOCHEMISTRY AND METABOLISM

Alexey Shapiguzov and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 82–92, https://doi.org/10.1104/pp.15.01893

The N-terminal domain of the Stt7/STN7 protein kinase is essential for its activity and interacts directly with the Rieske protein of the cytochrome b6f complex.

Wei Zeng and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 93–109, https://doi.org/10.1104/pp.15.01919

Xylan biosynthesis in the Golgi apparatus is affected by IRX9, IRX10, and IRX14A in Asparagus.

Trevor H. Yeats and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 110–124, https://doi.org/10.1104/pp.16.00302

The cellulose deficiency of the shv3svl1 mutant is enhanced by the uptake of exogenous sucrose, which results in carbon redirection from cellulose to starch biosynthesis.

Richard B. Peterson and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 125–138, https://doi.org/10.1104/pp.16.00120

Loss of a functional NAD(P)H dehydrogenase supercomplex impairs CO2 concentration in bundle sheath cells.

Chuankui Song and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 139–151, https://doi.org/10.1104/pp.16.00226

UDP-glucose:4-hydroxy-2,5-dimethyl-3(2H)-furanone glucosyltransferases were identified in strawberry fruit, and the position and nature of the amino acid residues important for the catalytic properties of these proteins were determined.

Katrin Geisler and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 152–164, https://doi.org/10.1104/pp.16.00180

Diterpene resin acids are major conifer defense compounds and important precursors for industrial bioproducts and are formed through a modular system of diterpene synthases and cytochrome P450s.

Marie-Christine Ralet and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 165–178, https://doi.org/10.1104/pp.16.00211

Arabidopsis seed mucilage contains a population of RG-I with xylan side branches that mediate the adsorption of mucilage to cellulose microfibrils in vitro.

Neil D. Adhikari and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 179–191, https://doi.org/10.1104/pp.15.01906

Rescuing the feedback inhibition of fatty acid synthesis in castor hydroxylase-expressing Arabidopsis seeds increases ricinoleic acid accumulation.

CELL BIOLOGY

Christian Hölscher and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 192–205, https://doi.org/10.1104/pp.15.01301

Oxidative pentose-phosphate pathway reactions are required for reproduction.

Erika Toda and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 206–214, https://doi.org/10.1104/pp.15.01953

Polyspermic rice zygote, which is produced by fusion of an egg cell with two sperm cells, has the potential to develop into triploid embryos and plants through typical nuclear and cell divisions.

Chao Wang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 215–229, https://doi.org/10.1104/pp.15.01716

Auxin and salicylic acid differentially affect clathrin recruitment to regulate endocytosis.

Hongjun Wang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 230–241, https://doi.org/10.1104/pp.16.00167

OsDMC1, a conserved recombinase, maintains the stability of the single-end invasion process but is not required for homologous pairing in rice, which is quite different from the DMC1 homologs identified so far in other organisms.

Shaolin Chen and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 242–250, https://doi.org/10.1104/pp.15.01874

Phosphorylation of a subunit of cellulose synthase differentially alters the rate at which cellulose synthase moves in both directions along microtubules, thereby impacting growth and development.

Rafael Andrade Buono and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 251–264, https://doi.org/10.1104/pp.16.00240

Analysis of mutant plants points to a synergistic role of two regulators of the ESCRT components SKD1 during plant development.

ECOPHYSIOLOGY AND SUSTAINABILITY

Jorge Gago and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 265–279, https://doi.org/10.1104/pp.15.01660

Multispecies meta-analysis of metabolic profiles reveals conserved and species-specific relationships between metabolism, leaf conductances, and net photosynthesis.

Robert J. DiMario and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 280–293, https://doi.org/10.1104/pp.15.01990

The removal of two cytoplasmic carbonic anhydrases, βCA2 and βCA4, from Arabidopsis causes reduced growth in plants grown in a low-CO2 environment.

He Qiang Lou and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 294–305, https://doi.org/10.1104/pp.16.01105

A Vigna umbellata formate dehydrogenase, VuFDH, confers tolerance to Al and low pH by regulating formate metabolism in plants.

Henri E. Cuny and Cyrille B.K. Rathgeber
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 306–317, https://doi.org/10.1104/pp.16.00037

In conifers, interactions between the rates and the durations of wood formation prevent the recording of climatic influences in tree-ring structure, except in the last formed cells.

GENES, DEVELOPMENT AND EVOLUTION

Ning Jia and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 318–333, https://doi.org/10.1104/pp.16.00312

A DNA2 homolog plays an important role in DNA damage repair, cell cycle progression, and the development of the shoot apical meristem and root apical meristem in higher plants.

Chunyu Zhang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 334–343, https://doi.org/10.1104/pp.16.01691

OsABF1, which is a drought inducible transcription factor, may function reduandantly with OsbZIP40 to regulate rice heading date in response to the alteration of ambient water availability.

Tina Kabelitz and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 344–358, https://doi.org/10.1104/pp.15.01688

A conserved JUMONJI protein with E3 ubiquitin ligase activity affects transposon silencing.

Manabu Yoshikawa and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 359–368, https://doi.org/10.1104/pp.16.00148

For efficient production of trans-acting siRNA, the third open reading frame on the primary precursor transcript that encompasses the microRNA173 target site needs to be translated.

Shea M. Monihan and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 369–379, https://doi.org/10.1104/pp.16.00334

CBL10 is critical for reproductive development in the presence of salt and functions in different pathways during vegetative and reproductive development.

Tomer Elitzur and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 380–391, https://doi.org/10.1104/pp.15.01866

Repression of either MaMADS1 or MaMADS2 results in delayed ethylene synthesis and maturation, although the fruit ripen normally when treated with ethylene.

Samuel Elias Wuest and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 392–404, https://doi.org/10.1104/pp.15.01995

Seed production in the monocarpic plant Arabidopsis thaliana promotes shoot senescence and suppresses shoot growth, affecting similar processes as apical dominance does.

Lu Wang and Yong-Ling Ruan
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 405–423, https://doi.org/10.1104/pp.16.00197

Genetic, developmental, and gene expression analyses of GhVIN1-RNAi cotton plants reveal critical roles of vacuolar invertase in floral organ development and male and female fertilities.

Jun Liu and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 424–436, https://doi.org/10.1104/pp.15.01335

A histone methyltransferase negatively regulates a set of genes coordinating seed size and lipid biosynthesis pathways in developing Arabidopsis embryos.

Pierre Baduel and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 437–451, https://doi.org/10.1104/pp.15.01875

Plants of the usually perennial autotetraploid Arabidopsis arenosa that colonized railways became vernalization insensitive, early and perpetually flowering, and constitutively heat and cold stress tolerant.

Hye Ryun Woo and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 452–467, https://doi.org/10.1104/pp.15.01929

RNA-seq analysis of total and small RNAs throughout the lifespan of Arabidopsis leaves revealed that leaf senescence proceeds with tight temporal and distinctive inter-organellar coordination of transcriptomes.

Xia Zhang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 468–482, https://doi.org/10.1104/pp.15.01814

The STEROL 4α-METHYL OXIDASE2 family proteins SMO2-1 and SMO2-2 function partially through effects on auxin accumulation, auxin response, and PIN1 expression to regulate embryogenesis in Arabidopsis.

Yonghong Zhang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 483–493, https://doi.org/10.1104/pp.15.01754

TOPOISOMERASE1α is required for survival of stele stem cells and maintenance of the undifferentiated state and number of columella stem cells in the Arabidopsis root.

MEMBRANES, TRANSPORT AND BIOENERGETICS

Zhi Chang Chen and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 494–507, https://doi.org/10.1104/pp.16.00017

OsCCC1 functions as a K+, Na+, and Cl cotransporter in rice to maintain osmotic potential for cell elongation through increasing internal solute concentrations.

James P. Santiago and Mechthild Tegeder
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 508–521, https://doi.org/10.1104/pp.16.00244

Arabidopsis AAP8 is essential for amino acid phloem loading during the vegetative and reproductive growth phases, and its function affects source leaf physiology, sink development, and seed yield.

Yusuke Aihara and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 522–529, https://doi.org/10.1104/pp.15.01886

Cyclic electron flow is accelerated under heat stress in Symbiodinium to promote photoprotective thermal energy dissipation.

Yaqi Sun and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 530–541, https://doi.org/10.1104/pp.16.00107

The biosynthesis and spatial positioning of β-carboxysomes, the carbon fixation machinery in cyanobacteria, are modulated by light intensity and redox state of photosynthetic electron transport chain.

Jacopo Martinis and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 542–553, https://doi.org/10.1104/pp.16.00009

Long distance transport of thiamine is required for growth and development and is facilitated by PUT3, the polyamine transporter.

Igor S. Kryvoruchko and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 554–565, https://doi.org/10.1104/pp.15.01910

SWEET11 is a nodule-specific sucrose transporter of Medicago truncatula.

Yoshihiro Kobae and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 566–579, https://doi.org/10.1104/pp.16.00127

Intracellular colonization of arbuscular mycorrhizal fungi is rapidly and temporarily inhibited by P and is stabilized by plant symbiotic P transporter.

Masaki Okumura and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 580–589, https://doi.org/10.1104/pp.16.00355

Photosynthesis activates the plasma membrane H+-ATPase in Arabidopsis mesophyll cells through C-terminal phosphorylation, and this activation is mediated by photosynthetic sugars, including sucrose.

SIGNALING AND RESPONSE

Judith Van Dingenen and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 590–605, https://doi.org/10.1104/pp.15.01669

Sucrose promotes early leaf growth by stimulating cell proliferation and repressing chloroplast transcription through the induction of GPT2 expression.

Chen Chen and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 606–622, https://doi.org/10.1104/pp.15.01992

Characterization of developing rice seeds under heat stress identifies OsMADS87 as a determinant of seed size sensitivity to increased temperature.

S.M. Abdul-Awal and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 623–631, https://doi.org/10.1104/pp.15.01965

ADP-ribosyl cyclase activity in Arabidopsis is up-regulated by nitric oxide to increase the cellular concentration of cyclic ADP ribose and free Ca2+.

Ghazanfar Abbas Khan and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 632–644, https://doi.org/10.1104/pp.16.00278

Phosphate deficiency induces the jasmonic acid biosynthesis and signaling pathways and increases resistance to insect herbivory.

Lina Yang and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 645–657, https://doi.org/10.1104/pp.16.00178

An effector from the potato late blight pathogen targets a host protein that negatively regulates immunity.

Louis-Philippe Hamel and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 658–674, https://doi.org/10.1104/pp.16.00234

A chloroplastic protein inhibits defense-induced cell death and is destabilized by activation of a disease resistance protein.

Pauline Trapet and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 675–693, https://doi.org/10.1104/pp.15.01537

Pyoverdine, a high-affinity ferric iron chelator synthesized by Pseudomonas fluorescens, impacts the growth/defense trade-off of Arabidopsis thaliana under iron deficient conditions.

Swayamjit Ray and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 694–706, https://doi.org/10.1104/pp.15.01854

Maize chitinases, Pr4 and Endochitinase A, in fall armyworm frass suppress herbivore-induced defenses in maize.

Jian Chen and others
Plant Physiology, Volume 171, Issue 1, May 2016, Pages 707–719, https://doi.org/10.1104/pp.15.01882

The transcription factor ZAT6 coordinately activates phytochelatin synthesis-related gene expression and directly targets GSH1 to positively regulate Cd accumulation and tolerance in Arabidopsis.

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