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Volume 38, Issue suppl_2, 1 July 2010
Editorial: 2010 Web Server Issue
Editorial
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W1–W2, https://doi.org/10.1093/nar/gkq562
Articles
Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W3–W6, https://doi.org/10.1093/nar/gkq553
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W7–W13, https://doi.org/10.1093/nar/gkq291
ALTER: program-oriented conversion of DNA and protein alignments
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W14–W18, https://doi.org/10.1093/nar/gkq321
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W19–W22, https://doi.org/10.1093/nar/gkq442
GUIDANCE: a web server for assessing alignment confidence scores
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W23–W28, https://doi.org/10.1093/nar/gkq443
SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W29–W34, https://doi.org/10.1093/nar/gkq298
Multi-Harmony: detecting functional specificity from sequence alignment
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W35–W40, https://doi.org/10.1093/nar/gkq415
ALADYN: a web server for aligning proteins by matching their large-scale motion
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W41–W45, https://doi.org/10.1093/nar/gkq293
GIS: a comprehensive source for protein structure similarities
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W46–W52, https://doi.org/10.1093/nar/gkq314
ProteinDBS v2.0: a web server for global and local protein structure search
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W53–W58, https://doi.org/10.1093/nar/gkq522
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W59–W63, https://doi.org/10.1093/nar/gkq487
agriGO: a GO analysis toolkit for the agricultural community
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W64–W70, https://doi.org/10.1093/nar/gkq310
MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W71–W77, https://doi.org/10.1093/nar/gkq329
R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W78–W83, https://doi.org/10.1093/nar/gkq482
PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W84–W89, https://doi.org/10.1093/nar/gkq320
i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W90–W95, https://doi.org/10.1093/nar/gkq324
ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W96–W102, https://doi.org/10.1093/nar/gkq418
DynaMod: dynamic functional modularity analysis
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W103–W108, https://doi.org/10.1093/nar/gkq362
Discovering causal signaling pathways through gene-expression patterns
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W109–W117, https://doi.org/10.1093/nar/gkq424
CCancer: a bird’s eye view on gene lists reported in cancer-related studies
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W118–W123, https://doi.org/10.1093/nar/gkq515
PINT: Pathways INtegration Tool
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W124–W131, https://doi.org/10.1093/nar/gkq499
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W132–W137, https://doi.org/10.1093/nar/gkq312
PathPred: an enzyme-catalyzed metabolic pathway prediction server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W138–W143, https://doi.org/10.1093/nar/gkq318
BioMet Toolbox: genome-wide analysis of metabolism
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W144–W149, https://doi.org/10.1093/nar/gkq404
VISIBIOweb: visualization and layout services for BioPAX pathway models
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W150–W154, https://doi.org/10.1093/nar/gkq352
The Ontology Lookup Service: bigger and better
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W155–W160, https://doi.org/10.1093/nar/gkq331
SOBA: sequence ontology bioinformatics analysis
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W161–W164, https://doi.org/10.1093/nar/gkq426
PhenoHM: human–mouse comparative phenome–genome server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W165–W174, https://doi.org/10.1093/nar/gkq472
BSQA: integrated text mining using entity relation semantics extracted from biological literature of insects
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W175–W181, https://doi.org/10.1093/nar/gkq544
waviCGH: a web application for the analysis and visualization of genomic copy number alterations
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W182–W187, https://doi.org/10.1093/nar/gkq441
THREaD Mapper Studio: a novel, visual web server for the estimation of genetic linkage maps
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W188–W193, https://doi.org/10.1093/nar/gkq430
mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W194–W200, https://doi.org/10.1093/nar/gkq326
SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W201–W209, https://doi.org/10.1093/nar/gkq513
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W210–W213, https://doi.org/10.1093/nar/gkq388
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W214–W220, https://doi.org/10.1093/nar/gkq537
SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W221–W227, https://doi.org/10.1093/nar/gkq520
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W228–W232, https://doi.org/10.1093/nar/gkq476
Targetfinder.org: a resource for systematic discovery of transcription factor target genes
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W233–W238, https://doi.org/10.1093/nar/gkq374
Serial Expression Analysis: a web tool for the analysis of serial gene expression data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W239–W245, https://doi.org/10.1093/nar/gkq488
CLIC: clustering analysis of large microarray datasets with individual dimension-based clustering
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W246–W253, https://doi.org/10.1093/nar/gkq516
ICM Web: the interactive chromatin modeling web server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W254–W261, https://doi.org/10.1093/nar/gkq496
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W262–W267, https://doi.org/10.1093/nar/gkq391
Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W268–W274, https://doi.org/10.1093/nar/gkq330
TransFind—predicting transcriptional regulators for gene sets
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W275–W280, https://doi.org/10.1093/nar/gkq438
SFmap: a web server for motif analysis and prediction of splicing factor binding sites
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W281–W285, https://doi.org/10.1093/nar/gkq444
TFM-Explorer: mining cis-regulatory regions in genomes
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W286–W292, https://doi.org/10.1093/nar/gkq473
SeLOX—a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W293–W298, https://doi.org/10.1093/nar/gkq523
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W299–W307, https://doi.org/10.1093/nar/gkq531
PCRTiler: automated design of tiled and specific PCR primer pairs
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W308–W312, https://doi.org/10.1093/nar/gkq485
RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W313–W320, https://doi.org/10.1093/nar/gkq425
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W321–W325, https://doi.org/10.1093/nar/gkq517
MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W326–W331, https://doi.org/10.1093/nar/gkq351
E-RNAi: a web application for the multi-species design of RNAi reagents—2010 update
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W332–W339, https://doi.org/10.1093/nar/gkq317
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W340–W347, https://doi.org/10.1093/nar/gkq483
rQuant.web: a tool for RNA-Seq-based transcript quantitation
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W348–W351, https://doi.org/10.1093/nar/gkq448
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W352–W359, https://doi.org/10.1093/nar/gkq423
SIREs: searching for iron-responsive elements
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W360–W367, https://doi.org/10.1093/nar/gkq371
CyloFold: secondary structure prediction including pseudoknots
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W368–W372, https://doi.org/10.1093/nar/gkq432
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W373–W377, https://doi.org/10.1093/nar/gkq316
WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W378–W384, https://doi.org/10.1093/nar/gkq431
DSAP: deep-sequencing small RNA analysis pipeline
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W385–W391, https://doi.org/10.1093/nar/gkq392
mirTools: microRNA profiling and discovery based on high-throughput sequencing
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W392–W397, https://doi.org/10.1093/nar/gkq393
CCRXP: exploring clusters of conserved residues in protein structures
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W398–W401, https://doi.org/10.1093/nar/gkq360
HotPoint: hot spot prediction server for protein interfaces
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W402–W406, https://doi.org/10.1093/nar/gkq323
ANCHOR: a web server and database for analysis of protein–protein interaction binding pockets for drug discovery
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W407–W411, https://doi.org/10.1093/nar/gkq502
PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W412–W416, https://doi.org/10.1093/nar/gkq474
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W417–W423, https://doi.org/10.1093/nar/gkq396
SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W424–W430, https://doi.org/10.1093/nar/gkq480
NAPS: a residue-level nucleic acid-binding prediction server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W431–W435, https://doi.org/10.1093/nar/gkq361
ProBiS: a web server for detection of structurally similar protein binding sites
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W436–W440, https://doi.org/10.1093/nar/gkq479
SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W441–W444, https://doi.org/10.1093/nar/gkq400
HexServer: an FFT-based protein docking server powered by graphics processors
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W445–W449, https://doi.org/10.1093/nar/gkq311
ConPlex: a server for the evolutionary conservation analysis of protein complex structures
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W450–W456, https://doi.org/10.1093/nar/gkq328
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W457–W461, https://doi.org/10.1093/nar/gkq373
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W462–W468, https://doi.org/10.1093/nar/gkq319
3DLigandSite: predicting ligand-binding sites using similar structures
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W469–W473, https://doi.org/10.1093/nar/gkq406
MetaMHC: a meta approach to predict peptides binding to MHC molecules
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W474–W479, https://doi.org/10.1093/nar/gkq407
DrugScorePPI webserver: fast and accurate in silico alanine scanning for scoring protein–protein interactions
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W480–W486, https://doi.org/10.1093/nar/gkq471
SBSPKS: structure based sequence analysis of polyketide synthases
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W487–W496, https://doi.org/10.1093/nar/gkq340
YLoc—an interpretable web server for predicting subcellular localization
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W497–W502, https://doi.org/10.1093/nar/gkq477
DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W503–W507, https://doi.org/10.1093/nar/gkq514
Struct2Net: a web service to predict protein–protein interactions using a structure-based approach
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W508–W515, https://doi.org/10.1093/nar/gkq481
PCFamily: a web server for searching homologous protein complexes
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W516–W522, https://doi.org/10.1093/nar/gkq464
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W523–W528, https://doi.org/10.1093/nar/gkq528
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W529–W533, https://doi.org/10.1093/nar/gkq399
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W534–W539, https://doi.org/10.1093/nar/gkq440
FoXS: a web server for rapid computation and fitting of SAXS profiles
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W540–W544, https://doi.org/10.1093/nar/gkq461
Dali server: conservation mapping in 3D
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W545–W549, https://doi.org/10.1093/nar/gkq366
PUDGE: a flexible, interactive server for protein structure prediction
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W550–W554, https://doi.org/10.1093/nar/gkq475
3V: cavity, channel and cleft volume calculator and extractor
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W555–W562, https://doi.org/10.1093/nar/gkq395
Protein annotation and modelling servers at University College London
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W563–W568, https://doi.org/10.1093/nar/gkq427
RosettaBackrub—a web server for flexible backbone protein structure modeling and design
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W569–W575, https://doi.org/10.1093/nar/gkq369
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W576–W581, https://doi.org/10.1093/nar/gkq535
fpocket: online tools for protein ensemble pocket detection and tracking
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W582–W589, https://doi.org/10.1093/nar/gkq383
deconSTRUCT: general purpose protein database search on the substructure level
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W590–W594, https://doi.org/10.1093/nar/gkq489
GRAPE: GRaphical Abstracted Protein Explorer
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W595–W601, https://doi.org/10.1093/nar/gkq398
MPlot—a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W602–W608, https://doi.org/10.1093/nar/gkq401
PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W609–W614, https://doi.org/10.1093/nar/gkq300
e-LEA3D: a computational-aided drug design web server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W615–W621, https://doi.org/10.1093/nar/gkq322
Frog2: Efficient 3D conformation ensemble generator for small compounds
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W622–W627, https://doi.org/10.1093/nar/gkq325
NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W628–W632, https://doi.org/10.1093/nar/gkq484
PROSESS: a protein structure evaluation suite and server
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W633–W640, https://doi.org/10.1093/nar/gkq375
ParticleStats: open source software for the analysis of particle motility and cytoskeletal polarity
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W641–W646, https://doi.org/10.1093/nar/gkq542
BAGEL2: mining for bacteriocins in genomic data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W647–W651, https://doi.org/10.1093/nar/gkq365
SIMCOMP/SUBCOMP: chemical structure search servers for network analyses
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W652–W656, https://doi.org/10.1093/nar/gkq367
SMOG@ctbp: simplified deployment of structure-based models in GROMACS
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W657–W661, https://doi.org/10.1093/nar/gkq498
POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W662–W666, https://doi.org/10.1093/nar/gkq445
GlycoViewer: a tool for visual summary and comparative analysis of the glycome
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W667–W670, https://doi.org/10.1093/nar/gkq446
MOWServ: a web client for integration of bioinformatic resources
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W671–W676, https://doi.org/10.1093/nar/gkq497
myExperiment: a repository and social network for the sharing of bioinformatics workflows
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W677–W682, https://doi.org/10.1093/nar/gkq429
Web Services
The EMBRACE web service collection
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W683–W688, https://doi.org/10.1093/nar/gkq297
BioCatalogue: a universal catalogue of web services for the life sciences
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W689–W694, https://doi.org/10.1093/nar/gkq394
A new bioinformatics analysis tools framework at EMBL–EBI
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W695–W699, https://doi.org/10.1093/nar/gkq313
G-language genome analysis environment with REST and SOAP web service interfaces
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W700–W705, https://doi.org/10.1093/nar/gkq315
TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W706–W711, https://doi.org/10.1093/nar/gkq386
IBWS: IST Bioinformatics Web Services
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W712–W718, https://doi.org/10.1093/nar/gkq416
WIWS: a protein structure bioinformatics Web service collection
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W719–W723, https://doi.org/10.1093/nar/gkq453
Opal web services for biomedical applications
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W724–W731, https://doi.org/10.1093/nar/gkq503
Stand-Alone Programs for High-Throughput Data
MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W732–W736, https://doi.org/10.1093/nar/gkq302
PEACE: Parallel Environment for Assembly and Clustering of Gene Expression
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W737–W742, https://doi.org/10.1093/nar/gkq470
ZOOM Lite: next-generation sequencing data mapping and visualization software
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W743–W748, https://doi.org/10.1093/nar/gkq538
GSA-SNP: a general approach for gene set analysis of polymorphisms
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W749–W754, https://doi.org/10.1093/nar/gkq428
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W755–W762, https://doi.org/10.1093/nar/gkq405
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 38 WEB SERVER ISSUE JULY 1, 2010
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Page i, https://doi.org/10.1093/nar/gkq607
Nucleic Acids Research
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Page ii, https://doi.org/10.1093/nar/gkq606
Subscriptions
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Page iii, https://doi.org/10.1093/nar/gkq608
