Issue navigation
Volume 38, Issue 14, 1 August 2010
Survey and Summary
Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4559–4569, https://doi.org/10.1093/nar/gkq201
Computational Biology
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4570–4578, https://doi.org/10.1093/nar/gkq211
Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4579–4585, https://doi.org/10.1093/nar/gkq220
Gene Regulation, Chromatin and Epigenetics
CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4586–4598, https://doi.org/10.1093/nar/gkq214
Genome-wide mapping of histone H4 serine-1 phosphorylation during sporulation in Saccharomyces cerevisiae
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4599–4606, https://doi.org/10.1093/nar/gkq218
Transcriptional corepressor SHP recruits SIRT1 histone deacetylase to inhibit LRH-1 transactivation
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4607–4619, https://doi.org/10.1093/nar/gkq227
Recruitment of MBD1 to target genes requires sequence-specific interaction of the MBD domain with methylated DNA
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4620–4634, https://doi.org/10.1093/nar/gkq228
Identification and characterization of alternative promoters of zebrafish Rtn-4/Nogo genes in cultured cells and zebrafish embryos
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4635–4650, https://doi.org/10.1093/nar/gkq230
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4651–4664, https://doi.org/10.1093/nar/gkq215
Distinct 5′ UTRs regulate XIAP expression under normal growth conditions and during cellular stress
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4665–4674, https://doi.org/10.1093/nar/gkq241
Silenced yeast chromatin is maintained by Sir2 in preference to permitting histone acetylations for efficient NER
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4675–4686, https://doi.org/10.1093/nar/gkq242
MCAF1 and synergistic activation of the transcription of Epstein–Barr virus lytic genes by Rta and Zta
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4687–4700, https://doi.org/10.1093/nar/gkq243
Genome Integrity, Repair and Replication
Ubc13 dosage is critical for immunoglobulin gene conversion and gene targeting in vertebrate cells
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4701–4707, https://doi.org/10.1093/nar/gkq154
Rad52 SUMOylation affects the efficiency of the DNA repair
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4708–4721, https://doi.org/10.1093/nar/gkq195
WRN helicase unwinds Okazaki fragment-like hybrids in a reaction stimulated by the human DHX9 helicase
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4722–4730, https://doi.org/10.1093/nar/gkq240
Genomics
Dynamic evolution of megasatellites in yeasts
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4731–4739, https://doi.org/10.1093/nar/gkq207
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4740–4754, https://doi.org/10.1093/nar/gkq197
Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4755–4767, https://doi.org/10.1093/nar/gkq202
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4768–4777, https://doi.org/10.1093/nar/gkq232
Molecular Biology
Global and local depletion of ternary complex limits translational elongation
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4778–4787, https://doi.org/10.1093/nar/gkq196
The siRNA sequence and guide strand overhangs are determinants of in vivo duration of silencing
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4788–4797, https://doi.org/10.1093/nar/gkq206
The C-terminus of Utp4, mutated in childhood cirrhosis, is essential for ribosome biogenesis
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4798–4806, https://doi.org/10.1093/nar/gkq185
Nucleolin binds to a subset of selenoprotein mRNAs and regulates their expression
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4807–4820, https://doi.org/10.1093/nar/gkq247
Nucleic Acid Enzymes
DNA-binding properties of T4 UvsY recombination mediator protein: polynucleotide wrapping promotes high-affinity binding to single-stranded DNA
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4821–4833, https://doi.org/10.1093/nar/gkq219
NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4834–4843, https://doi.org/10.1093/nar/gkq249
RNA
The role of the universally conserved A2450–C2063 base pair in the ribosomal peptidyl transferase center
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4844–4855, https://doi.org/10.1093/nar/gkq213
Structural Biology
Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4856–4867, https://doi.org/10.1093/nar/gkq134
The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4868–4876, https://doi.org/10.1093/nar/gkq155
Resolution and characterization of the structural polymorphism of a single quadruplex-forming sequence
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4877–4888, https://doi.org/10.1093/nar/gkq166
Insights into the mechanism of Rad51 recombinase from the structure and properties of a filament interface mutant
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Pages 4889–4906, https://doi.org/10.1093/nar/gkq209
Methods Online
Use of a microscope stage-mounted Nickel-63 microirradiator for real-time observation of the DNA double-strand break response
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e144, https://doi.org/10.1093/nar/gkq409
Binding of lac repressor-GFP fusion protein to lac operator sites inserted in the tobacco chloroplast genome examined by chromatin immunoprecipitation
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e145, https://doi.org/10.1093/nar/gkq413
A universal TagModule collection for parallel genetic analysis of microorganisms
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e146, https://doi.org/10.1093/nar/gkq419
Northern blot detection of endogenous small RNAs (∼14 nt) in bacterial total RNA extracts
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e147, https://doi.org/10.1093/nar/gkq437
Ratiometric bimolecular beacons for the sensitive detection of RNA in single living cells
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e148, https://doi.org/10.1093/nar/gkq436
Enhancement of gene targeting in human cells by intranuclear permeation of the Saccharomyces cerevisiae Rad52 protein
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e149, https://doi.org/10.1093/nar/gkq486
A structural-alphabet-based strategy for finding structural motifs across protein families
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e150, https://doi.org/10.1093/nar/gkq478
Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page e151, https://doi.org/10.1093/nar/gkq510
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 38 ISSUE 14 2010
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page i, https://doi.org/10.1093/nar/gkq745
Nucleic Acids Research
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page ii, https://doi.org/10.1093/nar/gkq744
Subscriptions
Nucleic Acids Research, Volume 38, Issue 14, 1 August 2010, Page iii, https://doi.org/10.1093/nar/gkq746
