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Volume 35, Issue suppl_1, 1 January 2007
Editorial
EDITORIAL
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D1–D2, https://doi.org/10.1093/nar/gkl1051
Articles
The Molecular Biology Database Collection: 2007 update
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D3–D4, https://doi.org/10.1093/nar/gkl1008
Database resources of the National Center for Biotechnology Information
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D5–D12, https://doi.org/10.1093/nar/gkl1031
DDBJ working on evaluation and classification of bacterial genes in INSDC
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D13–D15, https://doi.org/10.1093/nar/gkl908
EMBL Nucleotide Sequence Database in 2006
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D16–D20, https://doi.org/10.1093/nar/gkl913
GenBank
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D21–D25, https://doi.org/10.1093/nar/gkl986
Entrez Gene: gene-centered information at NCBI
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D26–D31, https://doi.org/10.1093/nar/gkl993
Developments in CORG: a gene-centric comparative genomics resource
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D32–D35, https://doi.org/10.1093/nar/gkl977
InSatDb: a microsatellite database of fully sequenced insect genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D36–D39, https://doi.org/10.1093/nar/gkl778
OriDB: a DNA replication origin database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D40–D46, https://doi.org/10.1093/nar/gkl758
Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D47–D50, https://doi.org/10.1093/nar/gkl807
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D51–D54, https://doi.org/10.1093/nar/gkl797
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D55–D60, https://doi.org/10.1093/nar/gkl851
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D61–D65, https://doi.org/10.1093/nar/gkl842
RetrOryza: a database of the rice LTR-retrotransposons
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D66–D70, https://doi.org/10.1093/nar/gkl780
SNPSTR: a database of compound microsatellite-SNP markers
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D71–D75, https://doi.org/10.1093/nar/gkl806
SGDB: a database of synthetic genes re-designed for optimizing protein over-expression
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D76–D79, https://doi.org/10.1093/nar/gkl648
TRDB—The Tandem Repeats Database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D80–D87, https://doi.org/10.1093/nar/gkl1013
VISTA Enhancer Browser—a database of tissue-specific human enhancers
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D88–D92, https://doi.org/10.1093/nar/gkl822
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D93–D98, https://doi.org/10.1093/nar/gkl884
ECgene: an alternative splicing database update
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D99–D103, https://doi.org/10.1093/nar/gkl992
H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D104–D109, https://doi.org/10.1093/nar/gkl854
U12DB: a database of orthologous U12-type spliceosomal introns
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D110–D115, https://doi.org/10.1093/nar/gkl796
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D116–D121, https://doi.org/10.1093/nar/gkl1011
PReMod: a database of genome-wide mammalian cis-regulatory module predictions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D122–D126, https://doi.org/10.1093/nar/gkl879
SwissRegulon: a database of genome-wide annotations of regulatory sites
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D127–D131, https://doi.org/10.1093/nar/gkl857
Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D132–D136, https://doi.org/10.1093/nar/gkl800
TRED: a transcriptional regulatory element database, new entries and other development
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D137–D140, https://doi.org/10.1093/nar/gkl1041
dbRES: a web-oriented database for annotated RNA editing sites
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D141–D144, https://doi.org/10.1093/nar/gkl815
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D145–D148, https://doi.org/10.1093/nar/gkl837
miRGen: a database for the study of animal microRNA genomic organization and function
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D149–D155, https://doi.org/10.1093/nar/gkl904
NATsDB: Natural Antisense Transcripts DataBase
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D156–D161, https://doi.org/10.1093/nar/gkl782
Noncoding RNAs database (ncRNAdb)
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D162–D164, https://doi.org/10.1093/nar/gkl994
PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D165–D168, https://doi.org/10.1093/nar/gkl870
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D169–D172, https://doi.org/10.1093/nar/gkl889
REDIdb: the RNA editing database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D173–D177, https://doi.org/10.1093/nar/gkl793
RNAdb 2.0—an expanded database of mammalian non-coding RNAs
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D178–D182, https://doi.org/10.1093/nar/gkl926
Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D183–D187, https://doi.org/10.1093/nar/gkl873
TassDB: a database of alternative tandem splice sites
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D188–D192, https://doi.org/10.1093/nar/gkl762
The Universal Protein Resource (UniProt)
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D193–D197, https://doi.org/10.1093/nar/gkl929
BindingDB: a web-accessible database of experimentally determined protein–ligand binding affinities
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D198–D201, https://doi.org/10.1093/nar/gkl999
PIDD: database for Protein Inter-atomic Distance Distributions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D202–D207, https://doi.org/10.1093/nar/gkl802
eSLDB: eukaryotic subcellular localization database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D208–D212, https://doi.org/10.1093/nar/gkl775
SUBA: the Arabidopsis Subcellular Database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D213–D218, https://doi.org/10.1093/nar/gkl863
FireDB—a database of functionally important residues from proteins of known structure
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D219–D223, https://doi.org/10.1093/nar/gkl897
New developments in the InterPro database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D224–D228, https://doi.org/10.1093/nar/gkl841
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D229–D231, https://doi.org/10.1093/nar/gkl922
A Protein Classification Benchmark collection for machine learning
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D232–D236, https://doi.org/10.1093/nar/gkl812
CDD: a conserved domain database for interactive domain family analysis
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D237–D240, https://doi.org/10.1093/nar/gkl951
EVEREST: a collection of evolutionary conserved protein domains
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D241–D246, https://doi.org/10.1093/nar/gkl850
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D247–D252, https://doi.org/10.1093/nar/gkl869
SISYPHUS—structural alignments for proteins with non-trivial relationships
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D253–D259, https://doi.org/10.1093/nar/gkl746
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D260–D264, https://doi.org/10.1093/nar/gkl1043
Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D265–D268, https://doi.org/10.1093/nar/gkl866
REBASE—enzymes and genes for DNA restriction and modification
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D269–D270, https://doi.org/10.1093/nar/gkl891
Sentra: a database of signal transduction proteins for comparative genome analysis
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D271–D273, https://doi.org/10.1093/nar/gkl949
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D274–D279, https://doi.org/10.1093/nar/gkl925
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D280–D286, https://doi.org/10.1093/nar/gkl883
GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages 287–290, https://doi.org/10.1093/nar/gkl907
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D291–D297, https://doi.org/10.1093/nar/gkl959
MMDB: annotating protein sequences with Entrez's 3D-structure database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D298–D300, https://doi.org/10.1093/nar/gkl952
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D301–D303, https://doi.org/10.1093/nar/gkl971
Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D304–D307, https://doi.org/10.1093/nar/gkl1007
The SUPERFAMILY database in 2007: families and functions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D308–D313, https://doi.org/10.1093/nar/gkl910
TMBETA-GENOME: database for annotated β-barrel membrane proteins in genomic sequences
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D314–D316, https://doi.org/10.1093/nar/gkl805
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D317–D321, https://doi.org/10.1093/nar/gkl809
GO PaD: the Gene Ontology Partition Database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D322–D327, https://doi.org/10.1093/nar/gkl799
GeneTrees: a phylogenomics resource for prokaryotes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D328–D331, https://doi.org/10.1093/nar/gkl905
Eukaryotic genome size databases
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D332–D338, https://doi.org/10.1093/nar/gkl828
Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D339–D342, https://doi.org/10.1093/nar/gkl1004
MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D343–D346, https://doi.org/10.1093/nar/gkl978
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D347–D353, https://doi.org/10.1093/nar/gkl947
PEDANT genome database: 10 years online
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D354–D357, https://doi.org/10.1093/nar/gkl1005
STRING 7—recent developments in the integration and prediction of protein interactions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D358–D362, https://doi.org/10.1093/nar/gkl825
euHCVdb: the European hepatitis C virus database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D363–D366, https://doi.org/10.1093/nar/gkl970
HepSEQ: International Public Health Repository for Hepatitis B
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D367–D370, https://doi.org/10.1093/nar/gkl874
The HIV positive selection mutation database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D371–D375, https://doi.org/10.1093/nar/gkl855
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D376–D380, https://doi.org/10.1093/nar/gkl779
ViTa: prediction of host microRNAs targets on viruses
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D381–D385, https://doi.org/10.1093/nar/gkl1009
MiST: a microbial signal transduction database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D386–D390, https://doi.org/10.1093/nar/gkl932
MvirDB—a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D391–D394, https://doi.org/10.1093/nar/gkl791
Towards pathogenomics: a web-based resource for pathogenicity islands
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D395–D400, https://doi.org/10.1093/nar/gkl790
PATRIC: The VBI PathoSystems Resource Integration Center
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D401–D406, https://doi.org/10.1093/nar/gkl858
RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D407–D412, https://doi.org/10.1093/nar/gkl865
The Sulfolobus database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D413–D415, https://doi.org/10.1093/nar/gkl847
VNTRDB: a bacterial variable number tandem repeat locus database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D416–D421, https://doi.org/10.1093/nar/gkl872
Xanthusbase: adapting wikipedia principles to a model organism database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D422–D426, https://doi.org/10.1093/nar/gkl881
ApiDB: integrated resources for the apicomplexan bioinformatics resource center
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D427–D430, https://doi.org/10.1093/nar/gkl880
Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D431–D438, https://doi.org/10.1093/nar/gkl1039
ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D439–D444, https://doi.org/10.1093/nar/gkl777
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D445–D451, https://doi.org/10.1093/nar/gkl770
Sequence resources at the Candida Genome Database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D452–D456, https://doi.org/10.1093/nar/gkl899
The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D457–D462, https://doi.org/10.1093/nar/gkl957
PROPHECY—a yeast phenome database, update 2006
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D463–D467, https://doi.org/10.1093/nar/gkl1029
Expanded protein information at SGD: new pages and proteome browser
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D468–D471, https://doi.org/10.1093/nar/gkl931
WormBook: the online review of Caenorhabditis elegans biology
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D472–D475, https://doi.org/10.1093/nar/gkl894
BeetleBase: the model organism database for Tribolium castaneum
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D476–D479, https://doi.org/10.1093/nar/gkl776
DroSpeGe: rapid access database for new Drosophila species genomes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D480–D485, https://doi.org/10.1093/nar/gkl997
FlyBase: genomes by the dozen
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D486–D491, https://doi.org/10.1093/nar/gkl827
GenomeRNAi: a database for cell-based RNAi phenotypes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D492–D497, https://doi.org/10.1093/nar/gkl906
Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D498–D502, https://doi.org/10.1093/nar/gkl804
VectorBase: a home for invertebrate vectors of human pathogens
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D503–D505, https://doi.org/10.1093/nar/gkl960
WormBase: new content and better access
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D506–D510, https://doi.org/10.1093/nar/gkl818
BRENDA, AMENDA and FRENDA: the enzyme information system in 2007
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D511–D514, https://doi.org/10.1093/nar/gkl972
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D515–D520, https://doi.org/10.1093/nar/gkl774
HMDB: the Human Metabolome Database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D521–D526, https://doi.org/10.1093/nar/gkl923
LMSD: LIPID MAPS structure database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D527–D532, https://doi.org/10.1093/nar/gkl838
SYSTOMONAS — an integrated database for systems biology analysis of Pseudomonas
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D533–D537, https://doi.org/10.1093/nar/gkl823
CellCircuits: a database of protein network models
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D538–D545, https://doi.org/10.1093/nar/gkl937
CutDB: a proteolytic event database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D546–D549, https://doi.org/10.1093/nar/gkl813
CYCLONET—an integrated database on cell cycle regulation and carcinogenesis
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D550–D556, https://doi.org/10.1093/nar/gkl912
DOMINO: a database of domain–peptide interactions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D557–D560, https://doi.org/10.1093/nar/gkl961
IntAct—open source resource for molecular interaction data
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D561–D565, https://doi.org/10.1093/nar/gkl958
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D566–D571, https://doi.org/10.1093/nar/gkl859
MINT: the Molecular INTeraction database
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D572–D574, https://doi.org/10.1093/nar/gkl950
PROTCOM: searchable database of protein complexes enhanced with domain–domain structures
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D575–D579, https://doi.org/10.1093/nar/gkl768
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein–Protein Interactions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D580–D589, https://doi.org/10.1093/nar/gkl836
UniHI: an entry gate to the human protein interactome
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D590–D594, https://doi.org/10.1093/nar/gkl817
Hedgehog Signaling Pathway Database: a repository of current annotation efforts and resources for the Hh research community
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D595–D598, https://doi.org/10.1093/nar/gkl1012
AgBase: a unified resource for functional analysis in agriculture
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D599–D603, https://doi.org/10.1093/nar/gkl936
AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D604–D609, https://doi.org/10.1093/nar/gkl946
Ensembl 2007
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D610–D617, https://doi.org/10.1093/nar/gkl996
The mouse Gene Expression Database (GXD): 2007 update
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D618–D623, https://doi.org/10.1093/nar/gkl1003
MamPol: a database of nucleotide polymorphism in the Mammalia class
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D624–D629, https://doi.org/10.1093/nar/gkl833
The mouse genome database (MGD): new features facilitating a model system
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D630–D637, https://doi.org/10.1093/nar/gkl940
Mouse Tumor Biology Database (MTB): status update and future directions
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D638–D642, https://doi.org/10.1093/nar/gkl983
Mouse Phenome Database (MPD)
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D643–D649, https://doi.org/10.1093/nar/gkl1049
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D650–D653, https://doi.org/10.1093/nar/gkl954
PigGIS: Pig Genomic Informatics System
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D654–D657, https://doi.org/10.1093/nar/gkl808
The Rat Genome Database, update 2007—Easing the path from disease to data and back again
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D658–D662, https://doi.org/10.1093/nar/gkl988
The ENCODE Project at UC Santa Cruz
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D663–D667, https://doi.org/10.1093/nar/gkl1017
The UCSC genome browser database: update 2007
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D668–D673, https://doi.org/10.1093/nar/gkl928
GeneSpeed: protein domain organization of the transcriptome
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D674–D679, https://doi.org/10.1093/nar/gkl990
PlasmID: a centralized repository for plasmid clone information and distribution
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D680–D684, https://doi.org/10.1093/nar/gkl898
D-HaploDB: a database of definitive haplotypes determined by genotyping complete hydatidiform mole samples
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D685–D689, https://doi.org/10.1093/nar/gkl848
FINDbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D690–D695, https://doi.org/10.1093/nar/gkl934
PhenomicDB: a new cross-species genotype/phenotype resource
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D696–D699, https://doi.org/10.1093/nar/gkl662
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D700–D706, https://doi.org/10.1093/nar/gkl826
Snap: an integrated SNP annotation platform
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D707–D710, https://doi.org/10.1093/nar/gkl969
SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D711–D715, https://doi.org/10.1093/nar/gkl962
Variation resources at UC Santa Cruz
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D716–D720, https://doi.org/10.1093/nar/gkl953
CancerGenes: a gene selection resource for cancer genome projects
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D721–D726, https://doi.org/10.1093/nar/gkl811
OncoDB.HCC: an integrated oncogenomic database of hepatocellular carcinoma revealed aberrant cancer target genes and loci
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D727–D731, https://doi.org/10.1093/nar/gkl845
KBERG: KnowledgeBase for Estrogen Responsive Genes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D732–D736, https://doi.org/10.1093/nar/gkl816
SynDB: a Synapse protein DataBase based on synapse ontology
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D737–D741, https://doi.org/10.1093/nar/gkl876
T1DBase: integration and presentation of complex data for type 1 diabetes research
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D742–D746, https://doi.org/10.1093/nar/gkl933
ArrayExpress—a public database of microarray experiments and gene expression profiles
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D747–D750, https://doi.org/10.1093/nar/gkl995
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D751–D755, https://doi.org/10.1093/nar/gkl748
Gene Aging Nexus: a web database and data mining platform for microarray data on aging
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D756–D759, https://doi.org/10.1093/nar/gkl798
NCBI GEO: mining tens of millions of expression profiles—database and tools update
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D760–D765, https://doi.org/10.1093/nar/gkl887
