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Section: Molecular and Structural Biology
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Journal Article

Histone tetrasome dynamics affects chromatin transcription Open Access

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Xiangyan Shi and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf356, https://doi.org/10.1093/nar/gkaf356
Published: 30 April 2025
Journal Article

Mapping effective microRNA pairing beyond the seed using abasic modifications Open Access

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David M Kosek and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf364, https://doi.org/10.1093/nar/gkaf364
Published: 29 April 2025
Journal Article

DYRK1B phosphorylates FOXO1 to promote hepatic gluconeogenesis Open Access

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Shanshan Li and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf319, https://doi.org/10.1093/nar/gkaf319
Published: 26 April 2025
Journal Article

Molecular basis of Streptomyces ECF σShbA factors transcribing principal σHrdB genes Open Access

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Guiyang Liu and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf339, https://doi.org/10.1093/nar/gkaf339
Published: 24 April 2025
Journal Article

Nonequilibrium hybridization-driven CRISPR/Cas adapter with extended energetic penalty for discrimination of single-nucleotide variants Open Access

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Qiong Liu and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf287, https://doi.org/10.1093/nar/gkaf287
Published: 17 April 2025
Journal Article

Proteome-wide microarray-based screening of PAR-binding proteins Open Access

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Bong Gu Kang and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf300, https://doi.org/10.1093/nar/gkaf300
Published: 16 April 2025
Journal Article

Autophagy induction enhances homologous recombination-associated CRISPR–Cas9 gene editing Open Access

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Hye Jin Nam and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf258, https://doi.org/10.1093/nar/gkaf258
Published: 15 April 2025
Journal Article

A two-step regulatory mechanism dynamically controls histone H3 acetylation by SAGA complex at growth-related promoters Open Access

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Sevil Zencir and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf276, https://doi.org/10.1093/nar/gkaf276
Published: 10 April 2025
Journal Article

Highly conserved ribosome biogenesis pathways between human and yeast revealed by the MDN1-NLE1 interaction and NLE1 containing pre-60S subunits Open Access

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Federica Fiorentino and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf255, https://doi.org/10.1093/nar/gkaf255
Published: 10 April 2025
Journal Article

Impacts of sequence and structure on pyrrolocytosine fluorescence in RNA Open Access

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Taylor L Coulson and Julia R Widom
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf262, https://doi.org/10.1093/nar/gkaf262
Published: 10 April 2025
Journal Article

Activation, incompatibility, and displacement of FIB replicons in E. coli Open Access

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Georgina S Lloyd and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf275, https://doi.org/10.1093/nar/gkaf275
Published: 10 April 2025
Journal Article

An enzymatic-independent function of palmitoyl hydrolase in cohesin loading onto chromosome Open Access

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Yi-Ting Wang and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf257, https://doi.org/10.1093/nar/gkaf257
Published: 07 April 2025
Journal Article

DNA/RNA hybrids avoid channel gating that leads to the continued packaging of numerous hybrids into the phi29 protein shell Open Access

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Dan Shu and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf242, https://doi.org/10.1093/nar/gkaf242
Published: 07 April 2025
Journal Article

Structural basis for control of integrative and conjugative element excision and transfer by the oligomeric winged helix–turn–helix protein RdfS Open Access

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Callum J Verdonk and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf249, https://doi.org/10.1093/nar/gkaf249
Published: 02 April 2025
Journal Article

Small nucleolar RNAs promote the restoration of muscle differentiation defects in cells from myotonic dystrophy type 1 Open Access

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Baptiste Bogard and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf232, https://doi.org/10.1093/nar/gkaf232
Published: 29 March 2025
Journal Article

Integrative structural analysis of NF45–NF90 heterodimers reveals architectural rearrangements and oligomerization on binding dsRNA Open Access

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Sophie Winterbourne and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf204, https://doi.org/10.1093/nar/gkaf204
Published: 28 March 2025
Journal Article

Structure and cooperative formation of a FLI1 filament on contiguous GGAA DNA sites Open Access

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Caixia Hou and Oleg V Tsodikov
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf205, https://doi.org/10.1093/nar/gkaf205
Published: 25 March 2025
Journal Article

Spatiotemporal dynamics of protamine–DNA condensation revealed by high-speed atomic force microscopy Open Access

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Goro Nishide and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf152, https://doi.org/10.1093/nar/gkaf152
Published: 24 March 2025
Journal Article

Light-dependent flavin redox and adduct states control the conformation and DNA-binding activity of the transcription factor EL222 Open Access

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Aditya S Chaudhari and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf215, https://doi.org/10.1093/nar/gkaf215
Published: 22 March 2025
Journal Article

Direct RNA sequencing of the Escherichia coli epitranscriptome uncovers alterations under heat stress Open Access

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Sebastián Riquelme-Barrios and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf175, https://doi.org/10.1093/nar/gkaf175
Published: 20 March 2025