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Volume 35, Issue 6, June 2023
Focus on RNA Biology
Focus Content
Editorial
Focus on RNA biology
In Brief
A host of messages: trans-species micro-RNAs from the parasitic plant Cuscuta campestris share a common promoter
Whole grain: A genome-wide landscape of translational regulation during bread wheat development
The small RNA family gets bigger: AGO1-bound noncanonical sRNAs are upregulated under nutrient deprivation in Chlamydomonas
Reviews
Beyond transcription: compelling open questions in plant RNA biology
Twelve experts present and discuss new and long-standing compelling open questions in plant RNA biology and future perspectives in the field.
Cotranscriptional RNA processing and modification in plants
Most primary RNAs mature through various RNA processing and modification events; here we review the current advances in understanding the crosstalk between transcription and RNA maturation in plants.
Rock, scissors, paper: How RNA structure informs function
Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association
Plant organellar RNA maturation
Do not panic: An intron-centric guide to alternative splicing
Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs
Small RNA-mediated DNA methylation during plant reproduction
The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future
The mRNA mobileome: challenges and opportunities for deciphering signals from the noise
Breakthrough Report
Trans-species microRNA loci in the parasitic plant Cuscuta campestris have a U6-like snRNA promoter
Large-scale Biology
The translational landscape of bread wheat during grain development
A unique translatomic resource provides insight into the translational control of gene expression during bread wheat grain development, facilitating crop improvement for optimal yield and quality.
Research Articles
Small RNAs >26 nt in length associate with AGO1 and are upregulated by nutrient deprivation in the alga Chlamydomonas
Structural insight into the activation of an Arabidopsis organellar C-to-U RNA editing enzyme by active site complementation
The crystal structure of DYW1 provides structural insight into the activation mechanism of cytidine deaminase by complementation of the substrate pocket in the DYW domain.
Functional interdependence of N6-methyladenosine methyltransferase complex subunits in Arabidopsis
Maintaining protein homeostasis among different subunits of the m6 A methyltransferase complex is essential for ensuring proper m6 A deposition in plants.
Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing
Arabidopsis PRP39a and SmD1b, two conserved spliceosome components, participate in splicing and synergistically promote transgene PTGS by preventing aberrant RNA degradation in the nucleus.
RNA degradome analysis reveals DNE1 endoribonuclease is required for the turnover of diverse mRNA substrates in Arabidopsis
Regular Content
In Brief
From the archives: Ear apical degeneration 1 is essential for maize ear development, SHOOT MERISTEMLESS regulates floral fate, and the role of profilin in pollen tube growth
High-temperature alert: PHYTOCHROME INTERACTING FACTOR 4 regulates microtubule organization to mediate high temperature-induced hypocotyl elongation
Coordinating phosphorus and jasmonate signaling: PHR1 partners with transcriptional regulators
Sending signals from shoot to root: OPT3 mediates systemic iron and copper signaling in Arabidopsis
The art of taking sides: Key determinants for the polar localization of silicon transporter
Making a giant: Uncovering gene regulation underlying the formation of giant cells in Arabidopsis sepals
WRKYng together: Coordination between kinase cascades and transcription factors contributes to immunity in rice
Breakthrough Report
GSK3 phosphorylates and regulates the Green Revolution protein Rht-B1b to reduce plant height in wheat
GSK3 phosphorylates the Green Revolution protein Rht-B1b, enhancing its ability to inhibit target transcription factor activity to reduce plant height in wheat.
Large-Scale Biology
Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana
Natural variation at KCS4 underlies a differential accumulation of polyunsaturated triacylglycerols under carbon starvation, by acting as a branch point in the fate of fatty acids.
Research Articles
ARBUSCULAR MYCORRHIZA-INDUCED KINASES AMK8 and AMK24 associate with the receptor-like kinase KINASE3 to regulate arbuscular mycorrhizal symbiosis in Lotus japonicus
A signaling pathway to accommodate arbuscular mycorrhizal fungi consists of receptor-like kinase–associated components at the periarbuscular membrane and is evolutionarily conserved in legumes and cereals.
Inhibition of SIZ1-mediated SUMOylation of HOOKLESS1 promotes light-induced apical hook opening in Arabidopsis
The E3 ligase SIZ1 regulates apical hook development by SUMOylating HOOKLESS1 in the dark, with light-induced ELONGATED HYPOCOTYL5 suppressing SIZ1 transcription to initiate apical hook unfolding.
PHYTOCHROME INTERACTING FACTOR 4 regulates microtubule organization to mediate high temperature-induced hypocotyl elongation in Arabidopsis
Antagonistic regulation of target genes by the SISTER OF TM3–JOINTLESS2 complex in tomato inflorescence branching
The MADS-box transcription factors SISTER OF TM3 and JOINTLESS 2 affect each other’s binding to FRUITFULL1 in an antagonistic regulatory module controlling tomato inflorescence branch number.
Diversity of woodland strawberry inflorescences arises from heterochrony regulated by TERMINAL FLOWER 1 and FLOWERING LOCUS T
FLOWERING LOCUS T1 and TERMINAL FLOWER 1 control the number of lateral branches and their branching iterations in the thyrse inflorescence of woodland strawberry.
Reciprocal regulation of flower induction by ELF3α and ELF3β generated via alternative promoter usage
EARLY FLOWERING3β (ELF3β) is generated via alternative promoter usage at the ELF3 locus and promotes flowering by blocking the function of ELF3α
Brassinosteroids regulate cotton fiber elongation by modulating very-long-chain fatty acid biosynthesis
Brassinosteroid signaling modulates the expression of 3-ketoacyl-CoA synthases, the rate-limiting enzymes in very long-chain fatty acid biosynthesis, thus regulating cotton fiber elongation.
PHOSPHATE STARVATION RESPONSE1 (PHR1) interacts with JASMONATE ZIM-DOMAIN (JAZ) and MYC2 to modulate phosphate deficiency-induced jasmonate signaling in Arabidopsis
PHOSPHATE STARVATION RESPONSE1 (PHR1) functions with JASMONATE ZIM-DOMAIN (JAZ) repressors and MYC2 to maintain the appropriate level of jasmonate signaling under conditions of phosphate deficiency.
Loss of OPT3 function decreases phloem copper levels and impairs crosstalk between copper and iron homeostasis and shoot-to-root signaling in Arabidopsis thaliana
Arabidopsis OPT3 loads Cu and Fe into phloem companion cells for distribution to sink tissues and systemic signaling of Cu and Fe deficiencies.
SWEET11b transports both sugar and cytokinin in developing barley grains
SWEET family proteins can additionally transport cytokinins synergistically with sugars during barley grain filling
INDETERMINATE1 autonomously regulates phosphate homeostasis upstream of the miR399-ZmPHO2 signaling module in maize
ID1 functions as an autonomous phosphate regulator upstream of the miR399-ZmPHO2 module and contributes to the link between phosphate homeostasis and plant development in maize.
Polar localization of a rice silicon transporter requires isoleucine at both C- and N-termini as well as positively charged residues
Amino acid residues at the N and C termini are required for polar localization of a silicon transporter in rice and this polarity is important for efficient silicon uptake.
An ancestral role for 3-KETOACYL-COA SYNTHASE3 as a negative regulator of plant cuticular wax synthesis
3-KETOACYL-COA SYNTHASE3 (KCS3) lacks canonical catalytic activity and negatively regulates cuticular wax synthesis by reducing the activities of KCS6s across diverse plant taxa from Arabidopsis to moss.
The ethylene-responsive transcription factor PpERF9 represses PpRAP2.4 and PpMYB114 via histone deacetylation to inhibit anthocyanin biosynthesis in pear
The ethylene-activated PpERF9-TOPLESS complex suppresses pear anthocyanin biosynthesis by inhibiting PpMYB114 and PpRAP2.4 expression via histone deacetylation.
The functional evolution of architecturally different plant geranyl diphosphate synthases from geranylgeranyl diphosphate synthase
Independent evolutionary processes led to homo- and heteromeric geranyl diphosphate synthases (GPPSs), and Leu-Val/Val-Ala residues were keys in homomeric GPPS and geranylgeranyl diphosphate synthase divergence.
Functional importance and divergence of plant apurinic/apyrimidinic endonucleases in somatic and meiotic DNA repair
Arabidopsis APEs have different substrate preferences and are required for genomic integrity in somatic and meiotic cells.
The START domain potentiates HD-ZIPIII transcriptional activity
The START domain potentiates HD-ZIPIII TF activity and uses ligand-induced conformational change to enable DNA binding, a finding that answers a long-standing question in plant development.
Enhancer activation via TCP and HD-ZIP and repression by Dof transcription factors mediate giant cell-specific expression
Dissection of an enhancer that drives giant cell-specific expression reveals that activation via TCPs and HD-ZIPs and repression via Dof transcription factors combine to mediate cell type specificity.
The maize ZmVPS23-like protein relocates the nucleotide-binding leucine-rich repeat protein Rp1-D21 to endosomes and suppresses the defense response
Maize ZmVPS23-like, a component of the ESCRT-I complex, interacts with the NLR protein Rp1-D21 and mediates its relocation to endosomes to suppress the defense response.