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Volume 229, Issue 5, 15 May 2024
Editorial Commentary
Allogeneic Natural Killer Cells: An Additional Player in Human Immunodeficiency Virus Cure Approaches?
Invited Perspective
Five Lessons of Resilience in Science
Viewpoint
Thinking Small, Stinking Big: The World of Microbial Odors
Major Articles and Brief Reports
HIV/AIDs
Safety and Virologic Impact of Haploidentical NK Cells Plus Interleukin 2 or N-803 in HIV Infection
In this pilot study in people with HIV, a single infusion of haploidentical related donor NK cells supported by either IL-2 or N-803 (an IL-15 superagonist) was well tolerated and resulted in decreased frequency of HIV-producing cells in lymph nodes.
Distinct Effects of Selective Serotonin Reuptake Inhibitors and Serotonin-Norepinephrine Reuptake Inhibitors on Soluble Biomarkers in Blood and Cerebrospinal Fluid of People With HIV
Among virally suppressed PWH, SSRIs were associated with reduced neurodegeneration and lower immune activation, SNRIs with higher levels of myeloid and lymphoid activation, while ACEIs and statins had no distinct biomarker signatures. Specific comedications may affect HIV-related persistent immune activation.
IL-32 Drives the Differentiation of Cardiotropic CD4+ T Cells Carrying HIV DNA in People With HIV
IL-32, a proinflammatory cytokine upregulated in HIV infection, induces the generation of CD4 T cells with cardiotropic phenotype. Analysis from people with HIV show that these cells are enriched with HIV DNA suggesting a potential role for IL-32 in heart inflammation.
Antiviral Activity of Lenacapavir Against Human Immunodeficiency Virus Type 2 (HIV-2) Isolates and Drug-Resistant HIV-2 Mutants
Lenacapavir is a first-in-class capsid inhibitor that acts at multiple steps in the HIV-1 replication cycle. Our findings show that lenacapavir is active against HIV-2 isolates and drug-resistant HIV-2 mutants in culture, albeit with reduced potency relative to HIV-1.
RNA Landscapes of Brain and Brain-Derived Extracellular Vesicles in Simian Immunodeficiency Virus Infection and Central Nervous System Pathology
RNA profiling of rigorously separated and characterized brain tissue-derived extracellular vesicles as well as source tissues from the simian immunodeficiency virus model of HIV disease reveal potential RNA regulatory networks associated with infection and CNS pathology.
Cannabis Use Associates With Reduced Proviral Burden and Inflammatory Cytokine in Tissues From Men With Clade C HIV-1 on Suppressive Antiretroviral Therapy
Cannabis use in men with subtype C HIV-1 and suppressed viral load associates with reduced size and distribution of tissue reservoirs, lower viral DNA copies in those tissues, as well as reduced expression levels of proinflammatory cytokines IL-1β and IL-6.
Vδ1 Effector and Vδ2 γδ T-Cell Subsets Shift in Frequency and Are Linked to Plasma Inflammatory Markers During Antiretroviral Therapy-Suppressed HIV Infection
We elucidated the diversity of circulating γδ T-cell subsets with new resolution. Our results reveal novel subsets within the Vδ1+ and Vδ2+ γδ T-cell factions and indicate selective alterations of subpopulations of Vδ1+ and Vδ2+ cells with ART-suppressed HIV infection.
COVID-2019 Disease Pathogenesis
Prospective Assessment of Humoral and Cellular Immune Responses to a Third COVID-19 mRNA Vaccine Dose Among Immunocompromised Individuals
Overall, a third mRNA vaccine improved serological responses among immunocompromised individuals and nonimmunocompromised HCW. SOT recipients and individuals with hematologic malignancies exhibit the poorest responses. T-cell responses appear more favorable in HCW.
Spike Protein Genetic Evolution in Patients at High Risk of Severe Coronavirus Disease 2019 Treated by Monoclonal Antibodies
Neutrophil Virucidal Activity Against SARS-CoV-2 Is Mediated by Neutrophil Extracellular Traps
Epitope Mapping of SARS-CoV-2 Spike Antibodies in Vaccinated Kidney Transplant Recipients Reveals Poor Spike Coverage Compared to Healthy Controls
Using phage display to map antibody responses against SARS-CoV-2, we demonstrate that, despite globally decreased responses, kidney transplant recipients recognize similar spike epitopes as controls, suggesting antibody breadth is not the cause of decreased vaccine efficacy in this immunosuppressed group.
Severe Acute Respiratory Syndrome Coronavirus 2 Infection Alters Mediators of Lung Tissue Remodeling In Vitro and In Vivo
Single-Cell Profiling of the Differential In Vivo Impact of Severe Acute Respiratory Syndrome Coronavirus 2 Infection Among Lung Tissue Cell Subtypes at the Protein Level
A mouse model of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection demonstrates that the differential impact of SARS-CoV-2 variants on lung may be attributed to differential levels of viral proteins among airway, immune, and endothelial lung cells.
Viral Disease Pathogenesis
Prevalence, Incidence, and Predictors of Kaposi Sarcoma–Associated Herpesvirus Infection Among Young Men Who Have Sex With Men in the Southern United States
Kaposi sarcoma continues to cause substantial morbidity and mortality in at-risk populations in the southern United States. Among young minority men who have sex with men in Houston, Texas, the prevalence of Kaposi sarcoma–associated herpesvirus was 36.7% and the incidence was 8.9 per 100 person-years.
Differential Induction of Interferon-Stimulated Genes by Cell-Based Versus Egg-Based Quadrivalent Influenza Vaccines in Children During the 2018–2019 Season
Despite similar antibody response, cell-based influenza vaccine induces a distinct transcriptomic response compared with egg-based vaccine. Cell-based influenza vaccination stimulates increased interferon-induced gene expression, which tracks with vaccine-induced seroconversion, regardless of vaccine type.
A Bivalent Human Norovirus Vaccine Induces Homotypic and Heterotypic Neutralizing Antibodies
Human norovirus genotype–specific antibody levels measured in 3 assays were highly correlated. However, choice of antibody assay can affect assessments of vaccine immunogenicity; specifically, a bivalent GI.1/GII.4 vaccine associated with protection from GII.2-associated illness induced infrequent GII.2-specific neutralization responses.
Analysis of the Immunostimulatory Effects of Cytokine-Expressing Internal Ribosome Entry Site–Based RNA Adjuvants and Their Applications
Cytokine-expressing RNA-based adjuvants activated antigen-presenting cells and increased the proportion of polyclonal T cells when used in conjunction with an influenza vaccine while minimizing critical illness scores and weight loss in immunized mice.
Interleukin 13–Induced Inflammation Increases DPP4 Abundance but Does Not Enhance Middle East Respiratory Syndrome Coronavirus Replication in Airway Epithelia
Stimulating airway epithelia with interleukin 13 increased DPP4, the receptor for Middle East respiratory syndrome coronavirus (MERS-CoV). However, this failed to increase MERS-CoV infection, suggesting that elevated airway epithelial DPP4 cannot explain increased risk of severe MERS in chronic airway disease.
Viral Interference During Influenza A–SARS-CoV-2 Coinfection of the Human Airway Epithelium and Reversal by Oseltamivir
Replicating influenza A virus induces a robust interferon response in the human airway epithelium that interferes with SARS-CoV-2 in simultaneous and sequential infections, and both antiviral response and viral interference are reversed by targeting influenza replication with oseltamivir.
Cytomegalovirus Viral Load Threshold to Guide Preemptive Therapy in Hematopoietic Cell Transplant Recipients: Correlation With Cytomegalovirus Disease
Abundant Neutrophil-Initiated Acute Myocardial Injury Following Coxsackievirus A6 Infection
In the study, we used a CVA6-induced myocardial injury mouse model and neutrophil-depleted antibodies to investigate the pathophysiology of myocardial injury caused by CVA6. Our results showed that excessive neutrophils contribute to myocardial injury caused by CVA6 infection.
Global Health
Influenza A(H3N2) Antibody Responses to Standard-Dose Versus Enhanced Influenza Vaccine Immunogenicity in Older Adults and Prior Season's Vaccine Status
During 2 consecutive years with unchanged A(H3N2) vaccine strain, reduced antibody response was observed in older adults who received prior-year vaccination compared to those who did not, regardless of receiving standard-dose or enhanced influenza vaccines in the current year.
Rotavirus Genotypes in the Postvaccine Era: A Systematic Review and Meta-analysis of Global, Regional, and Temporal Trends by Rotavirus Vaccine Introduction
We conducted a meta-analysis of published rotavirus genotype data. After accounting for natural regional and temporal variation, there was no substantial evidence of long-term, vaccine-related selective pressures on circulating genotypes. Increased G2P[4] prevalence may be transient after rotavirus vaccine introduction.
Epidemiology of Rotavirus in Humans, Animals, and the Environment in Africa: A Systematic Review and Meta-analysis
We performed a systematic review and meta-analysis of studies of rotavirus in Africa and found high prevalences in human, animal, and environmental water sources, underscoring the need for a One Health approach to limiting the spread of this disease.
Mycobacterium Tuberculosis
Whole-Genome Sequencing Predicting Phenotypic Antitubercular Drug Resistance: Meta-analysis
Whole-genome sequencing (WGS) accurately identifies isoniazid and rifampicin resistance. For most drugs, positive WGS results are reliable to predict phenotypic drug sensitivity. Noncatalog-based approach does not improve the predictive value for phenotypic antituberculosis drugs resistance compared to catalog-based approach.
Utility of Mycobacterium tuberculosis Genome Sequencing Snapshots to Assess Transmission Dynamics Over Time
We explore the potential utility and limitations of Mycobacterium tuberculosis whole-genome sequencing at a sentinel site in a high-incidence setting for assessing changes in transmission dynamics over time.
Phase 1 Open-Label Dose Escalation Trial for the Development of a Human Bacillus Calmette-Guérin Challenge Model for Assessment of Tuberculosis Immunity In Vivo
Presented are results from an open-label dose escalation human Bacillus Calmette-Guérin challenge study. The combined results indicate that this human challenge model is a feasible approach for assessing in vivo tuberculosis immunity and could facilitate the vaccine development process.
Adjunct Therapy With All-trans-Retinoic Acid Improves Therapeutic Efficacy Through Immunomodulation While Treating Tuberculosis With Antibiotics in Mice
ATRA was found to modulate the immune response through ERK and p38 pathways to protect the host from Mycobacterium tuberculosis infection. Furthermore, combination therapy of ATRA and INH significantly increased the host resistance to tuberculosis.
Bacterial Disease Pathogenesis
Prosurvival Pathway Protects From Clostridioides difficile Toxin-Mediated Cell Death
New approaches are urgently needed for Clostridioides difficile infection. This study provides proof-of-concept for a nonantibiotic strategy against C. difficile by targeting cell survival pathway.
There is an urgent need for new nonantibiotic-based treatment strategies for Clostridioides difficile infection. C. difficile toxin B (TcdB) is a virulent factor that is essential for causing disease. Here, we investigated whether a survival-signaling pathway could protect against TcdB. We found significant increase in caspase-3 apoptotic activity in intestinal epithelial cells of mice exposed to TcdB. Subsequently, activation of the MIF-CD74-Akt prosurvival signaling pathway blocked TcdB-induced caspase-3 activity and intestinal epithelial cell death. This brief report provides proof-of-concept that targeting prosurvival pathways may represent a unique antibiotic-independent strategy for protecting against C. difficile toxin-mediated cell death.
Extracellular Vesicles From Mycoplasma gallisepticum: Modulators of Macrophage Activation and Virulence
Mycoplasma gallisepticum–produced extracellular vesicles (EVs) carry key virulence factors and influence macrophage activation, contributing to M. gallisepticum pathogenesis. Understanding EVs and their proteins sheds light on infection mechanisms and informs prevention strategies.
Use of Transcriptional Signatures to Differentiate Pathogen-Specific and Treatment-Specific Host Responses in Patients With Bacterial Bloodstream Infections
RNA sequencing performed with blood samples from patients with gram-positive or gram-negative bacteremia demonstrated reduced host transcriptional signatures involving mitochondrial energy transduction in methicillin-resistant versus methicillin-susceptible Staphylococcus aureus. Patients with gram-negative infection had increased activation of the classic complement system.
Analysis of In-Patient Evolution of Escherichia coli Reveals Potential Links to Relapse of Bone and Joint Infections
We demonstrated that 3 Escherichia coli strains involved in bone and joint infection (BJI) relapses adapted in patients through various molecular mechanisms, allowing them to outcompete other bacteria or evade the immune system. Understanding in-patient adaptation may help fight BJI relapses.
Parasites
Effectiveness of an Unsupervised Primaquine Regimen for Preventing Plasmodium vivax Malaria Relapses in Northeast Myanmar: A Single-Arm Nonrandomized Observational Study
We assessed the unsupervised 14-day low-dose primaquine for preventing relapses in vivax malaria patients without screening for glucose-6-phosphate dehydrogenase deficiency in eastern Myanmar. One-year follow-ups revealed a cumulative recurrence rate of 9.1%, with all relapses occurring within the first 6 months.
Plasmodium falciparum Glutamic Acid-Rich Protein-Independent Polyclonal Antibodies Inhibit Malaria Parasite Growth in Human Erythrocytes
PfGARP is an erythrocyte surface antigen encoded by Plasmodium falciparum, the causative agent of severe human malaria pathophysiology. We provide evidence for a mechanism that targets growth arrest of intraerythrocytic parasites by polyclonal antibodies against PfGARP via a novel PfGARP-independent pathway.
Low Prevalence of Antimalarial Resistance Mutations in India During 2014–2015: Impact of Combining First-line Therapy With Primaquine
In India’s antimalarial resistance surveillance (2014–2015), Pfdhfr exhibited triple mutants (northeast), widespread Pfdhps wild types, and predominantly Pfmdr1 wild types (except northwest). Pfk13 had synonymous mutations (central). Resistance varied across clusters, with higher resistance in the northeast. Primaquine use likely contained drug resistance.
Review
A Systematic Review of Potential Biomarkers for Bacterial Burden and Treatment Efficacy Assessment in Tuberculosis Platform-Based Clinical Trials
Tuberculosis treatment development could be accelerated with the use of adaptive platform trials, but efficient surrogates are needed for decision making. This systematic review summarizes the published evidence about biomarkers evaluated to predict outcomes relevant for tuberculosis clinical trials.