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Co-Translational mRNA Decay in Plants: Recent advances and future directions
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Jean-Marc Deragon and Rémy Merret
Journal of Experimental Botany, eraf146, https://doi.org/10.1093/jxb/eraf146
Published: 09 April 2025
...Jean-Marc Deragon; Rémy Merret Accepted Manuscript Co-Translational mRNA Decay in Plants: Recent advances and future directions Jean-Marc Deragon1,2, Rémy Merret3* 1 CNRS-LGDP UMR 5096, 58 avenue Paul Alduy, 66860 Perpignan, France 2 Université de Perpignan Via Domitia, LGDP-UMR5096, 58 avenue Paul...
Journal Article
Effects of seasonality and climate on the sporulation of single Heterobasidion annosum sensu stricto and H. parviporum fruiting bodies in Norway spruce stands of Latvia
Guglielmo Lione and others
Forestry: An International Journal of Forest Research, cpaf013, https://doi.org/10.1093/forestry/cpaf013
Published: 02 April 2025
... on climatic variables, or seasonality. However, for risk prediction, we recommend to use models based on short-term climatic variables rather than seasonality. aerobiology modeling plant pathogens risk of infection spore trapping wood decay fungi European Regional Development Fund 10.13039/501100008530...
Journal Article
Temporal fruit microbiome and immunity dynamics in post-harvest apple (Malus x domestica)
Roselane Kithan-Lundquist and others
Horticulture Research, uhaf063, https://doi.org/10.1093/hr/uhaf063
Published: 25 February 2025
... fruit decay postharvest disease plant immunity ORIGINAL UNEDITED MANUSCRIPT 1 Title: 2 Temporal fruit microbiome and immunity dynamics in post harvest apple (Malus x 3 domestica) 4 5 Authors: 6 Roselane Kithan-Lundquist*,1; Hannah M. McMillan*,2; Sheng-Yang He1,3,4,5; George W. Sundin5 7 8 1...
Journal Article
Weighting the past: an extended relational event model for negative and positive events
Giuseppe Arena and others
Journal of the Royal Statistical Society Series A: Statistics in Society, qnae151, https://doi.org/10.1093/jrsssa/qnae151
Published: 17 January 2025
... influence of past interactions (Section 2.2 ). Finally, we discuss the use of parametric memory decays that reflect the temporal influence of past events (Section 2.3 ), we define sentiment-driven network statistics (Section 2.4 ), and we present the fitting and the testing of various hypothesis tests...
Journal Article
Paradoxical combination of osteosclerosis and osteopenia in an adult woman with biallelic TNFRSF11A loss-of-function variants escaping nonsense-mediated decay
Dario Gajewski and others
in
JBMR Plus
JBMR Plus, Volume 9, Issue 3, March 2025, ziae179, https://doi.org/10.1093/jbmrpl/ziae179
Published: 08 January 2025
...-mediated decay, potentially permitting residual protein function. Analysis of patient-derived osteoclasts cultured on glass surfaces showed partial differentiation. However, in vitro resorptive function was strongly impaired, which was clinically reflected by reduced serum concentration of the bone...
Journal Article
Decay Rates of Maternal Tetanus, Diphtheria, and Pertussis Antibody Levels in Early and Moderate-to-Late Preterm and Term Infants at Birth and at Two Months
Maarten M Immink and others
Open Forum Infectious Diseases, Volume 12, Issue 1, January 2025, ofae717, https://doi.org/10.1093/ofid/ofae717
Published: 10 December 2024
... following second trimester maternal Tdap vaccination between 20 and 24 weeks’ gestational age (GA) showed a faster decay rate of Tdap-related immunoglobulin G in early preterms born before 32 weeks’ GA compared with moderate-to-late preterms and full-terms. This is different from previous studies and merits...
Journal Article
Stabilization of bilinear systems with distributed delays using the Banach state space decomposition method
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Ayoub Cheddour and others
IMA Journal of Mathematical Control and Information, Volume 41, Issue 4, December 2024, Pages 611–633, https://doi.org/10.1093/imamci/dnae027
Published: 20 September 2024
... conditions based on an observability condition expressed by the semigroup solution of the linear part of the bilinear system. An explicit estimate on the convergence of the decay rate is established. Moreover, some sufficient conditions are used to discuss the weak stabilization of the considered system...
Journal Article
Characterization of BioID tagging systems in budding yeast and exploring the interactome of the Ccr4-Not complex
Jeffrey Pfannenstein and others
G3 Genes|Genomes|Genetics, Volume 14, Issue 11, November 2024, jkae221, https://doi.org/10.1093/g3journal/jkae221
Published: 13 September 2024
... of the enzyme to explore the interactome of different subunits of the Ccr4 -Not gene regulatory complex. We find that Ccr4 -Not predominantly labeled cytoplasmic mRNA regulators, consistent with its function in mRNA decay and translation quality control in this cell compartment. Mass spectrometry...
Journal Article
Effects of Meyerozyma guilliermondii PJ15 on the biocontrol of Penicillium crustosum causing postharvest decay in Orah and its influence on the microbial diversity of Orah
Liujian Ye (叶柳健) and others
Food Quality and Safety, Volume 8, 2024, fyae041, https://doi.org/10.1093/fqsafe/fyae041
Published: 28 August 2024
... diversity changes in P. crustosum causing postharvest decay in Orah. Materials and Methods The biocontrol effect was verified by confrontation experiments. The microbial diversity was analyzed using high-throughput sequencing technology. Metabolomic analysis was performed using liquid...
Journal Article
Archaea, bacteria and protists share a depth–decay relationship of community similarity in deep oceans
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Wenxue Wu and others
Journal of Plankton Research, Volume 46, Issue 4, July/August 2024, Pages 398–402, https://doi.org/10.1093/plankt/fbae034
Published: 08 July 2024
.... , Acosta , A. T. R. , Alahuhta , J. , Altman , J. , Angiolini , C. , Aroviita , J. et al. ( 2022 ) Distance decay 2.0 – a global synthesis of taxonomic and functional turnover in ecological communities . Glob. Ecol. Biogeogr. , 31 , 1399 – 1421 . https://doi.org/10.1111/geb...
Journal Article
Interspecies ecological competition rejuvenates decayed Geobacter electroactive biofilm
Yin Ye and others
The ISME Journal, Volume 18, Issue 1, January 2024, wrae118, https://doi.org/10.1093/ismejo/wrae118
Published: 25 June 2024
... applications in biosensing, wastewater treatment, energy production, and chemical biosynthesis. However, during the operation of BESs, EABs inevitably decay. Seeking approaches to rejuvenate decayed EABs is critical for the sustainability and practical application of BESs. Prophage induction has been...
Journal Article
Exploring edge effects on pollination syndromes in dry forests: implications for conservation strategies
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Gudryan J Baronio and others
Biological Journal of the Linnean Society, Volume 144, Issue 4, April 2025, blae055, https://doi.org/10.1093/biolinnean/blae055
Published: 17 June 2024
... influence pollination syndromes is vital for effective conservation, highlighting the importance of continued research into floral responses to edge effects for protecting vulnerable species and habitats in dry forests. border effects Caatinga ecosystem distance decay hypothesis floral traits functional...
Journal Article
RNA degradation in human mitochondria: the journey is not finished
Giulia Santonoceto and others
Human Molecular Genetics, Volume 33, Issue R1, 1 June 2024, Pages R26–R33, https://doi.org/10.1093/hmg/ddae043
Published: 23 May 2024
... is a complex composed of the RNA helicase SUV3 (also known as SUPV3L1) and polynucleotide phosphorylase (PNPase, PNPT1). It is the best-characterized RNA-degrading machinery in human mitochondria, which is primarily responsible for the decay of mitochondrial antisense RNA. The mechanism of mitochondrial sense...
Journal Article
Reliability of Noninvasive Sonic Tomography for Detection and Quantification of Internal Defects in Yoshino Cherry
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Gwanggyu Lee and Jiwon Son
Forest Science, Volume 70, Issue 3, June 2024, Pages 259–265, https://doi.org/10.1093/forsci/fxae011
Published: 26 March 2024
... Publication Model ( https://dbpia.nl.go.kr/pages/standard-publication-reuse-rights ) Abstract Preventive maintenance through monitoring and early detection is important for trees that are structurally weak due to internal decay. Once internal decay has occurred, recovery of lost strength is irreversible...
Journal Article
Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species
Lydia Kipping and others
The ISME Journal, Volume 18, Issue 1, January 2024, wrae050, https://doi.org/10.1093/ismejo/wrae050
Published: 22 March 2024
... machinery during deadwood decomposition. To achieve this goal, we applied an in situ metaproteomic approach to the deadwood of twelve common tree species after ~8 ½ years of decay in a temperate forest. This experiment is part of a long-term deadwood experiment with a focus on biodiversity...
Journal Article
Computational reproducibility of Jupyter notebooks from biomedical publications
Sheeba Samuel and Daniel Mietchen
in
GigaScience
GigaScience, Volume 13, 2024, giad113, https://doi.org/10.1093/gigascience/giad113
Published: 11 January 2024
... GitHub dependency decay Python workflow documentation Alfred P. Sloan Foundation 10.13039/100000879 G-2021-17106 Deutsche Forschungsgemeinschaft 10.13039/501100001659 460135501 275/334-1 512648189 Key Points We present a systematic attempt to automatically rerun Jupyter notebooks...
Journal Article
Genetic screens in Saccharomyces cerevisiae identify a role for 40S ribosome recycling factors Tma20 and Tma22 in nonsense-mediated decay
Miguel Pacheco and others
G3 Genes|Genomes|Genetics, Volume 14, Issue 3, March 2024, jkad295, https://doi.org/10.1093/g3journal/jkad295
Published: 10 January 2024
... is properly cited. Abstract The decay of messenger RNA with a premature termination codon by nonsense-mediated decay (NMD) is an important regulatory pathway for eukaryotes and an essential pathway in mammals. NMD is typically triggered by the ribosome terminating at a stop codon that is aberrantly distant...
Journal Article
Rapid assessment of changes in phage bioactivity using dynamic light scattering
Tejas Dharmaraj and others
in
PNAS Nexus
PNAS Nexus, Volume 2, Issue 12, December 2023, pgad406, https://doi.org/10.1093/pnasnexus/pgad406
Published: 27 November 2023
... ). Phages, like other multimeric protein assemblies ( 21 , 22 ), can exhibit poor aqueous stability and decay into noninfectious forms in aqueous solution over time ( 17 ). Oxidation contributes to the instability of viral particles ( 23–26 ), leading to noninfectious products including aggregates...
Journal Article
Macroalgal microbiome biogeography is shaped by environmental drivers rather than geographical distance
William S Pearman and others
Annals of Botany, Volume 133, Issue 1, 1 January 2024, Pages 169–182, https://doi.org/10.1093/aob/mcad151
Published: 07 October 2023
... taxa. (4) How are distance–decay relationships affected by the abundance of different microbes? We hypothesize that environmental distance–decay relationships will grow stronger as microbes become rarer as a result of higher levels of environmental filtering. In this study, we examine...
Journal Article
Proline-rich transmembrane protein 2 knock-in mice present dopamine-dependent motor deficits
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Daisuke Hatta and others
The Journal of Biochemistry, Volume 174, Issue 6, December 2023, Pages 561–570, https://doi.org/10.1093/jb/mvad074
Published: 04 October 2023
...-maleimidobenzoyl-N-hydroxysuccinimide ester; NMD, nonsense-mediated mRNA decay; PKD, paroxysmal kinesigenic dyskinesia; PRRT2, proline-rich transmembrane protein 2; SNARE, soluble N-ethylmaleimide-sensitive factor attachment protein receptor KAKENHI 10.13039/501100001691 20K22688 18H02720/21H02809 Japan...
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