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Volume 37, Issue 6, 1 April 2009
Survey and Summary
Circular dichroism and conformational polymorphism of DNA
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1713–1725, https://doi.org/10.1093/nar/gkp026
An evaluation of custom microarray applications: the oligonucleotide design challenge
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1726–1739, https://doi.org/10.1093/nar/gkp053
Chemistry and Synthetic Biology
A synthetic snRNA m3G-CAP enhances nuclear delivery of exogenous proteins and nucleic acids
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1925–1935, https://doi.org/10.1093/nar/gkp048
Gene Regulation, Chromatin and Epigenetics
Sem1p and Ubp6p orchestrate telomeric silencing by modulating histone H2B ubiquitination and H3 acetylation
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1843–1853, https://doi.org/10.1093/nar/gkn1049
JWA regulates XRCC1 and functions as a novel base excision repair protein in oxidative-stress-induced DNA single-strand breaks
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1936–1950, https://doi.org/10.1093/nar/gkp054
Genome Integrity, Repair and Replication
A role for monoubiquitinated FANCD2 at telomeres in ALT cells
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1740–1754, https://doi.org/10.1093/nar/gkn995
The formation of double-strand breaks at multiply damaged sites is driven by the kinetics of excision/incision at base damage in eukaryotic cells
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1767–1777, https://doi.org/10.1093/nar/gkp010
Reactive oxygen species generated by thiopurine/UVA cause irreparable transcription-blocking DNA lesions
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1951–1961, https://doi.org/10.1093/nar/gkp070
Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1962–1972, https://doi.org/10.1093/nar/gkp071
Genomics
Centromere sequence and dynamics in Dictyostelium discoideum
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1809–1816, https://doi.org/10.1093/nar/gkp017
Molecular Biology
Fidelity of plus-strand priming requires the nucleic acid chaperone activity of HIV-1 nucleocapsid protein
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1755–1766, https://doi.org/10.1093/nar/gkn1045
Improved tetracycline repressors for gene silencing in mycobacteria
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1778–1788, https://doi.org/10.1093/nar/gkp015
Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1817–1828, https://doi.org/10.1093/nar/gkp018
AID can restrict L1 retrotransposition suggesting a dual role in innate and adaptive immunity
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1854–1867, https://doi.org/10.1093/nar/gkp030
Borrelia burgdorferi EbfC defines a newly-identified, widespread family of bacterial DNA-binding proteins
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1973–1983, https://doi.org/10.1093/nar/gkp027
Functional four-base A/T gap core sequence CATTAG of P53 response elements specifically bound tetrameric P53 differently than two-base A/T gap core sequence CATG bound both dimeric and tetrameric P53
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1984–1990, https://doi.org/10.1093/nar/gkp033
The replication of plastid minicircles involves rolling circle intermediates
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1991–2002, https://doi.org/10.1093/nar/gkp063
Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 2003–2013, https://doi.org/10.1093/nar/gkp077
Nucleic Acid Enzymes
Identification of a residue critical for the excision of 3′-blocking ends in apurinic/apyrimidinic endonucleases of the Xth family
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1829–1842, https://doi.org/10.1093/nar/gkp021
Human DNA polymerase θ possesses 5′-dRP lyase activity and functions in single-nucleotide base excision repair in vitro
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1868–1877, https://doi.org/10.1093/nar/gkp035
A junction branch point adjacent to a DNA backbone nick directs substrate cleavage by Saccharomyces cerevisiae Mus81-Mms4
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 2026–2036, https://doi.org/10.1093/nar/gkp038
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3′–5′ exonuclease activity
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 2037–2052, https://doi.org/10.1093/nar/gkp064
Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 2053–2063, https://doi.org/10.1093/nar/gkp042
RNA
Molecular dissection of translation termination mechanism identifies two new critical regions in eRF1
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1789–1798, https://doi.org/10.1093/nar/gkp012
Adenylation of plant miRNAs
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1878–1885, https://doi.org/10.1093/nar/gkp031
A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1886–1896, https://doi.org/10.1093/nar/gkp036
Kinetoplastid RNA editing involves a 3′ nucleotidyl phosphatase activity
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1897–1906, https://doi.org/10.1093/nar/gkp049
U1-independent pre-mRNA splicing contributes to the regulation of alternative splicing
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1907–1914, https://doi.org/10.1093/nar/gkp050
Structural Biology
Structural insights into TDP-43 in nucleic-acid binding and domain interactions
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1799–1808, https://doi.org/10.1093/nar/gkp013
Crystal structure of KorA bound to operator DNA: insight into repressor cooperation in RP4 gene regulation
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 1915–1924, https://doi.org/10.1093/nar/gkp044
The regulatory domain of the RIG-I family ATPase LGP2 senses double-stranded RNA
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Pages 2014–2025, https://doi.org/10.1093/nar/gkp059
Methods Online
A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e42, https://doi.org/10.1093/nar/gkp037
Vectors expressing efficient RNA decoys achieve the long-term suppression of specific microRNA activity in mammalian cells
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e43, https://doi.org/10.1093/nar/gkp040
Manipulating transgenes using a chromosome vector
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e44, https://doi.org/10.1093/nar/gkp058
Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e45, https://doi.org/10.1093/nar/gkp045
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e46, https://doi.org/10.1093/nar/gkp080
Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e47, https://doi.org/10.1093/nar/gkp099
Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page e48, https://doi.org/10.1093/nar/gkp139
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 37 ISSUE 6 2009
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page i, https://doi.org/10.1093/nar/gkp246
Nucleic Acids Research
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page ii, https://doi.org/10.1093/nar/gkp245
Subscriptions
Nucleic Acids Research, Volume 37, Issue 6, 1 April 2009, Page iii, https://doi.org/10.1093/nar/gkp247
