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Volume 20, Issue 2, March 2019
Paper
Bioinformatics on a national scale: an example from Switzerland
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 361–369, https://doi.org/10.1093/bib/bbx073
Bioinformatics in Germany: toward a national-level infrastructure
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 370–374, https://doi.org/10.1093/bib/bbx040
Bioinformatics in the Netherlands: the value of a nationwide community
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 375–383, https://doi.org/10.1093/bib/bbx087
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 384–389, https://doi.org/10.1093/bib/bbx071
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 390–397, https://doi.org/10.1093/bib/bbx064
A global perspective on evolving bioinformatics and data science training needs
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 398–404, https://doi.org/10.1093/bib/bbx100
A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 405–415, https://doi.org/10.1093/bib/bbx112
Degrees of freedom analysis in educational research and decision-making: leveraging qualitative data to promote excellence in bioinformatics training and education
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 416–425, https://doi.org/10.1093/bib/bbx106
Alignment-free inference of hierarchical and reticulate phylogenomic relationships
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 426–435, https://doi.org/10.1093/bib/bbx067
Elucidating the editome: bioinformatics approaches for RNA editing detection
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 436–447, https://doi.org/10.1093/bib/bbx129
Prediction of protein–protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.)
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 448–456, https://doi.org/10.1093/bib/bbx132
Translational medicine in the Age of Big Data
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 457–462, https://doi.org/10.1093/bib/bbx116
Toward completion of the Earth’s proteome: an update a decade later
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 463–470, https://doi.org/10.1093/bib/bbx127
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 471–481, https://doi.org/10.1093/bib/bbx122
A rank-based algorithm of differential expression analysis for small cell line data with statistical control
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 482–491, https://doi.org/10.1093/bib/bbx135
Evaluation of variable selection methods for random forests and omics data sets
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 492–503, https://doi.org/10.1093/bib/bbx124
Machine learning approaches to decipher hormone and HER2 receptor status phenotypes in breast cancer
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 504–514, https://doi.org/10.1093/bib/bbx138
MicroRNAs and complex diseases: from experimental results to computational models
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 515–539, https://doi.org/10.1093/bib/bbx130
Review article
Harmonizing semantic annotations for computational models in biology
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 540–550, https://doi.org/10.1093/bib/bby087
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 551–564, https://doi.org/10.1093/bib/bby032
Progress in single-access information systems for wheat and rice crop improvement
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 565–571, https://doi.org/10.1093/bib/bby016
Molecular subtyping of cancer: current status and moving toward clinical applications
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 572–584, https://doi.org/10.1093/bib/bby026
Disease prediction by cell-free DNA methylation
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 585–597, https://doi.org/10.1093/bib/bby029
Analysis of long noncoding RNAs highlights region-specific altered expression patterns and diagnostic roles in Alzheimer’s disease
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 598–608, https://doi.org/10.1093/bib/bby021
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 609–623, https://doi.org/10.1093/bib/bby025
Robust genetic interaction analysis
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 624–637, https://doi.org/10.1093/bib/bby033
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 638–658, https://doi.org/10.1093/bib/bby028
Community-driven roadmap for integrated disease maps
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 659–670, https://doi.org/10.1093/bib/bby024
Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 671–681, https://doi.org/10.1093/bib/bby027
Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 682–689, https://doi.org/10.1093/bib/bby034
Post genome-wide association analysis: dissecting computational pathway/network-based approaches
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 690–700, https://doi.org/10.1093/bib/bby035
Application of Atlas of Cancer Signalling Network in preclinical studies
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 701–716, https://doi.org/10.1093/bib/bby031
Case Study
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 717–731, https://doi.org/10.1093/bib/bby030
Editorial
Recent developments of software and database in microbial genomics and functional genomics
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 732–734, https://doi.org/10.1093/bib/bby013
Bioinformatics: scalability, capabilities and training in the data-driven era
Briefings in Bioinformatics, Volume 20, Issue 2, March 2019, Pages 735–736, https://doi.org/10.1093/bib/bbz053
