1-20 of 798
Keywords: visualization
Sort by
Journal Article
Adrian Ortega and others
Translational Behavioral Medicine, Volume 15, Issue 1, January 2025, ibaf009, https://doi.org/10.1093/tbm/ibaf009
Published: 26 March 2025
... binge-eating intervention to learn how users would engage with prediction data and inform how to present these data visually. We additionally sought to understand how prediction intervals would help users understand uncertainty in these predictions and how users would perceive their actual progress...
Journal Article
ACCEPTED MANUSCRIPT
Abraham L van Eijnatten and others
ISME Communications, ycaf036, https://doi.org/10.1093/ismeco/ycaf036
Published: 24 February 2025
... their abundance patterns across samples. As clusters of correlating taxa (co-abundance clusters) often indicate a shared response to environmental drivers, network visualization contributes to system understanding. Currently, most tools for creating and visualizing co-abundance networks from microbiome data...
Journal Article
Yuansheng Zhou and others
GigaScience, Volume 14, 2025, giaf002, https://doi.org/10.1093/gigascience/giaf002
Published: 17 February 2025
..., provided the original work is properly cited. Abstract Background Spatially resolved profiling technologies to quantify transcriptomes, epigenomes, and proteomes have been emerging as groundbreaking methods for comprehensive molecular characterizations. Dimensionality reduction and visualization...
Journal Article
Hao Yang and others
Precision Clinical Medicine, Volume 8, Issue 1, March 2025, pbaf003, https://doi.org/10.1093/pcmedi/pbaf003
Published: 08 February 2025
... time-series visualization predicting mortality National Natural Science Foundation of China 10.13039/501100001809 32200545 32270690 West China Hospital, Sichuan University 10.13039/501100013365 ZYGD23012 ZYAI24044 Xunta de Galicia 10.13039/501100010801 ED431C2022/46 GRC...
Journal Article
Regan J Hayward and others
GigaScience, Volume 14, 2025, giae120, https://doi.org/10.1093/gigascience/giae120
Published: 03 February 2025
... this problem and can be easily deployed on a standard web server or using cloud services. It is organism-agnostic, accommodates data and annotations from various sources, and allows filtering based on KEGG pathways, Gene Ontology terms, and curated gene sets. Visualizations are provided through a plug...
Journal Article
Rion Brattig Correia and others
Journal of the American Medical Informatics Association, ocaf012, https://doi.org/10.1093/jamia/ocaf012
Published: 31 January 2025
... knowledge graph (KG) computed with a generalizable, open-source methodology. Results Our approach is based on a novel network sparsification method that uses the metric backbone of weighted graphs to discover important edges for inference, recommendation, and visualization. We demonstrate by studying...
Journal Article
Yongjie Xu and others
Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbae687, https://doi.org/10.1093/bib/bbae687
Published: 24 January 2025
... development and differentiation by capturing the gene expression profiles of individual cells. The role of dimensionality reduction and visualization in the interpretation of scRNA-seq data has gained widely acceptance. However, current methods face several challenges, including incomplete structure...
Journal Article
Helena Klara Jambor and others
Journal of the American Medical Informatics Association, Volume 32, Issue 3, March 2025, Pages 480–491, https://doi.org/10.1093/jamia/ocae319
Published: 16 January 2025
... usability of visual timelines for communicating cancer treatment paths. We examined how these visual aids enhance participants’ and patients’ understanding of their treatment plans. Materials and Methods The study included 2 online surveys and 1 in-person survey with hematology cancer patients...
Journal Article
Qinglong Zhang and others
Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbae720, https://doi.org/10.1093/bib/bbae720
Published: 11 January 2025
..., spvAPA improves the visualization of high-dimensional data for discovering novel cell subtypes, which considers APA features and dual modalities of gene expression and APA. Evaluations across nine single-cell and spatial transcriptomics datasets demonstrate the effectiveness and applicability of spvAPA...
Journal Article
Jehangir Khan and others
IMA Journal of Management Mathematics, dpaf001, https://doi.org/10.1093/imaman/dpaf001
Published: 10 January 2025
... the items in cold storage. Keeping different risks under consideration, the resilience of the SC of perishable products is studied using visualization based on Multi-Criteria Decision Making (MCDM) method (a sub-field in operations research used to deal with multi-criteria problems). Despite prior attempts...
Journal Article
Yertay Sultan and others
Digital Scholarship in the Humanities, Volume 40, Issue 1, April 2025, Pages 295–307, https://doi.org/10.1093/llc/fqae090
Published: 02 January 2025
... and legal examination, and data processing methods using Natural Language Processing software. Through analysis of films, video games, and qualitative text review, the research found that modern technologies—particularly AI and computer graphics—have greatly enhanced the visualization of fantasy worlds...
Journal Article
Yueer Li and others
Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbae679, https://doi.org/10.1093/bib/bbae679
Published: 30 December 2024
... and a stand-alone command-line interface (CLI) for local operation or deployment on high-performance computing (HPC) clusters. iPhylo supports National Center for Biotechnology Information (NCBI) taxonomy for biologicals and ChemOnt and NPClassifier for chemical classifications. The iPhylo visualization...
Journal Article
Ibrahim George-Sankoh and others
JAMIA Open, Volume 7, Issue 4, December 2024, ooae134, https://doi.org/10.1093/jamiaopen/ooae134
Published: 18 November 2024
... 10.13039/100000002 R35-GM134863 An interdisciplinary team of clinicians, researchers, analysts, and scientists reviewed data visualizations on an ongoing basis to identify data discrepancies, prioritize data selection, and develop strategies to optimize data visualization for maximum utility...
Journal Article
Shuanghui Chen and others
Genome Biology and Evolution, Volume 16, Issue 11, November 2024, evae249, https://doi.org/10.1093/gbe/evae249
Published: 15 November 2024
... AncestryPainter to version 2.0 by coding in an R package and improving the layout, providing more options and compatible statistical functions for graphing. Apart from improving visualization functions per se in this update, we added an extra graphing module to visualize genetic distance through radial bars...
Journal Article
Jun-Su Park and Seung-Ho Ham
Journal of Computational Design and Engineering, Volume 11, Issue 6, December 2024, Pages 193–212, https://doi.org/10.1093/jcde/qwae099
Published: 05 November 2024
... to automatically extract points from two-dimensional lines and visualize them in three dimensions. The proposed method consists of three steps. The first step is a point extraction through image processing, which uses a starting point search algorithm to access overlapping or intersection lines and extracts...
Journal Article
Zheng Fang and others
Genomics, Proteomics & Bioinformatics, Volume 22, Issue 5, October 2024, qzae069, https://doi.org/10.1093/gpbjnl/qzae069
Published: 08 October 2024
... import customized .csv files to view annotated spectra of interest, which enables the visualization of identification results from other identification tools in the community. With spectrum data in standard open mzML format, GP-Plotter can provide universal ion annotation and spectral visualization...
Journal Article
Xiaoyu Hu and others
Diseases of the Esophagus, Volume 37, Issue 12, December 2024, doae076, https://doi.org/10.1093/dote/doae076
Published: 30 September 2024
... device photographic catheter real-time visualization Drug Regulatory Science Project of Gansu Provincial Drug Administration Gastroesophageal reflux disease (GERD) is a common, economically burdensome, and diagnostically heterogeneous public health issue. 1 Compared to simple pH monitoring...
Includes: Multimedia
Journal Article
Gabriela Morgenshtern and others
Journal of the American Medical Informatics Association, Volume 31, Issue 11, November 2024, Pages 2496–2506, https://doi.org/10.1093/jamia/ocae230
Published: 30 September 2024
... available activity patterns of interest, experts can cluster sequences by their similarity in the Pattern Explorer View (B), and discovered patterns of interest can be contextualized through explanatory metadata visualizations. Data, model, and visualization parameters can be adjusted with the Configuration...
Journal Article
Charles Rahal and John Mohan
Journal of the Royal Statistical Society Series A: Statistics in Society, qnae092, https://doi.org/10.1093/jrsssa/qnae092
Published: 27 September 2024
...-value Community Interest Companies, and discuss potential further areas of research within a healthcare context which such government transaction data makes possible. big data data visualization healthcare supply National Health Service H10 H41 H51 I11 L10 The provision of NHS services has...
Journal Article
Antonio Parraga-Leo and others
JAMIA Open, Volume 7, Issue 3, October 2024, ooae099, https://doi.org/10.1093/jamiaopen/ooae099
Published: 27 September 2024
..., diversity measures, CST, and phylogeny (left). A user can visualize demographic features of the cohort, diversity measures (including correlations between them) by outcome of interest, alluvial plots of CSTs, dimensionality reduction plots of phylogeny, and heatmaps of taxonomical features (right...