..., and maintenance of graph databases will be key for knowledge generation in systems biology and other research fields with heterogeneous data. graph databases RDF NoSQL databases systems biology network biology ontology European Union 501100000780 101136957 In the last decade, new technologies...

... of languages such as RDF, RDFS or OWL. However, these languages have important expressive limits, since none of them reaches the full expressive power of a first-order language. As a result, large parts of our knowledge—in particular, mathematical and scientific theories—cannot currently be made available...

...://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract This article proposes that Resource Description Framework (RDF) technology is well suited for representing and storing inherently connected...

... features per subject from each patient’s primary GTV. Software for the image-based features was as described elsewhere by Shi et al ²⁶ and the PyRadiomics ²⁷ software packages. We converted the radiomics to RDF and created a radiomics_annotation.local linking file, same...

... API can be leveraged by future research efforts. ontology metagenomics microbial ecology RDF FAIR data National Science Foundation 10.13039/100000001 OCE-1639614 CISE-1640775 Simons Foundation 10.13039/100000893 481471 Elucidating the complex ecological relationships between...

... conceived as a property of the apple or, in other words, as one of its attributes, this statement is interpreted in RDF as involving a relation (rdf:type) between the apple and the class of red things. Also note that, in RDF, the term ‘property’ is not a synonym of ‘attribute’, but rather of ‘binary...

... spectroscopy. pair/radial distribution function (PDF/RDF) 4D-STEM polymer blends phase mapping local structure analysis Properties and functionality of organic composite materials are directly related to their molecular geometry, the molecular packing and the morphology of the phase distribution [ 1 – 3...

... categorization RDF code list machine learning European Union (EU) reallocates its money to their member states using different kinds of funding. There are many different funding programmes ranging from Consumer protection via Humanitarian aid to Territorial cooperation. The funding...

... and related properties. This meta-model is implemented as Resource Description Framework (RDF) vocabularies that help experts design their domain-specific high-level business capabilities that can be used for annotating their processes, services, applications, etc. We validate the business capability meta...

... The combination of Galaxy and Docker offers a solution for faithfully reproducing and sharing complex data retrieval and analysis workflows based on the SADI Semantic web service design patterns. Semantic Web RDF SADI Web service Workflow Galaxy Docker Reproducibility The Semantic Web is a ‘third...

... in nre^¬, even when allowing transitive closure. RDF databases nested regular expression star-free nested regular expression complement difference Tarski-SPARQL #2;c The British Computer Society 2014. All rights reserved. For Permissions...

... function (RDF) analysis to quantify the composition wavelength and amplitude of spinodal decomposition is proposed. Wavelengths estimated from RDF have a power-law type evolution and are in reasonable agreement with wavelengths estimated using other more conventional methods. The main advantages...

... is demonstrated for two systems, one with multiple amorphous phases and one with multiple phases (amorphous and nanocrystalline) with similar chemistry. nanobeam diffraction spectral imaging RDF STEM structural mapping multivariate statistical analysis disordered materials The increasing importance...

... below. In addition to RDF as a common syntax for data, the W3C provides the Web Ontology Language (OWL) to describe the structure and meaning of that data, by way of a formal ontology. A formal ontology consists of definitions, stated in formal logic, for a set of classes and predicates...

...Giovambattista Ianni; Alessandra Martello; Claudio Panetta; Giorgio Terracina Efficiently Querying RDF(S) Ontologies with Answer Set Programming GIOVAMBATTISTA IANNI, Dipartimento di Matematica, Università della Calabria, I...

... techniques to the problem of information retrieval in the life sciences space. This article gives an overview of the principles underlying a Semantic Web-enabled information retrieval system: creating a unified abstraction for knowledge using the RDF semantic network model; designing semantic lenses...

...Lee Feigenbaum; Sean Martin; Matthew N. Roy; Benjamin Szekely; Wing C. Yung While some structure can be imposed on RDF data via the use of ontologies (specified in the Web Ontology Language (OWL) [ 9 ]), data is not invalidated if it contains properties that do not conform to an ontology...

...Makiko SAKKA; Tetsuya KIMURA; Kazuo SAKKA Biosci. Biotechnol. Biochem., 70 (12), 2868 2873, 2006 Comparison of Microbial Consortia in Refuse-Derived Fuel (RDF) Preparations between Japan and Germany Makiko SAKKA,y Tetsuya KIMURA, and Kazuo SAKKA Faculty of Bioresources, Mie University, Tsu 514-8507...

...Benjamin M. Good; Mark D. Wilkinson Semantic Web Ontologies RDF LSID OWL Bioinformatics Creeps The World Wide Web (WWW) can be envisaged as a graph in which the nodes are documents and the unlabeled edges are the hyperlinks. The Semantic Web (SW) can be thought of as a graph in which...

... that extend traditional keyword search and database querying techniques. Finally, some of the challenges that have to be addressed to make the vision of a biomedical Semantic Web a reality are discussed. Semantic Web ontologies RDF OWL semantic search semantic association Terri Attwood The PRINTS...