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Authors: Stephen D. Bentley
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Journal Article

Epidemiology of Group B Streptococcus: Maternal Colonization and Infant Disease in Kampala, Uganda Open Access

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Mary Kyohere and others
Open Forum Infectious Diseases, Volume 12, Issue 4, April 2025, ofaf167, https://doi.org/10.1093/ofid/ofaf167
Published: 18 March 2025
Journal Article

Estimating between-country migration in pneumococcal populations Open Access

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Sophie Belman and others
G3 Genes|Genomes|Genetics, Volume 14, Issue 6, June 2024, jkae058, https://doi.org/10.1093/g3journal/jkae058
Published: 20 March 2024
Journal Article

Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae Open Access

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Min Jung Kwun and others
Nucleic Acids Research, Volume 51, Issue 19, 27 October 2023, Pages 10375–10394, https://doi.org/10.1093/nar/gkad760
Published: 27 September 2023
Journal Article

Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci Open Access

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Chrispin Chaguza and others
Genome Biology and Evolution, Volume 14, Issue 4, April 2022, evac052, https://doi.org/10.1093/gbe/evac052
Published: 19 April 2022
Journal Article

RCandy: an R package for visualizing homologous recombinations in bacterial genomes Free

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Chrispin Chaguza and others
Bioinformatics, Volume 38, Issue 5, March 2022, Pages 1450–1451, https://doi.org/10.1093/bioinformatics/btab814
Published: 02 December 2021
Journal Article

Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models Open Access

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Angharad E Green and others
Molecular Biology and Evolution, Volume 38, Issue 6, June 2021, Pages 2209–2226, https://doi.org/10.1093/molbev/msab018
Published: 27 January 2021
Journal Article

A Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus pneumoniae Serotype 2 Free

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Ron Dagan and others
Clinical Infectious Diseases, Volume 73, Issue 11, 1 December 2021, Pages e3768–e3777, https://doi.org/10.1093/cid/ciaa1720
Published: 17 November 2020
Journal Article

Persistent and Emerging Pneumococcal Carriage Serotypes in a Rural Gambian Community After 10 Years of Pneumococcal Conjugate Vaccine Pressure Free

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Effua Usuf and others
Clinical Infectious Diseases, Volume 73, Issue 11, 1 December 2021, Pages e3825–e3835, https://doi.org/10.1093/cid/ciaa856
Published: 25 June 2020
Journal Article

A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa Open Access

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Stephanie W Lo and others
Journal of Antimicrobial Chemotherapy, Volume 75, Issue 3, March 2020, Pages 512–520, https://doi.org/10.1093/jac/dkz477
Published: 02 December 2019
Journal Article

Genome-wide epistasis and co-selection study using mutual information Open Access

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Johan Pensar and others
Nucleic Acids Research, Volume 47, Issue 18, 10 October 2019, Page e112, https://doi.org/10.1093/nar/gkz656
Published: 30 July 2019
Journal Article

Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data Open Access

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Chrispin Chaguza and others
Clinical Infectious Diseases, Volume 70, Issue 7, 1 April 2020, Pages 1294–1303, https://doi.org/10.1093/cid/ciz404
Published: 16 May 2019
Journal Article

Fast hierarchical Bayesian analysis of population structure Open Access

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Gerry Tonkin-Hill and others
Nucleic Acids Research, Volume 47, Issue 11, 20 June 2019, Pages 5539–5549, https://doi.org/10.1093/nar/gkz361
Published: 11 May 2019
Journal Article

Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition Open Access

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Min Jung Kwun and others
Nucleic Acids Research, Volume 46, Issue 21, 30 November 2018, Pages 11438–11453, https://doi.org/10.1093/nar/gky906
Published: 13 October 2018
Journal Article

Bayesian inference of ancestral dates on bacterial phylogenetic trees Open Access

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Xavier Didelot and others
Nucleic Acids Research, Volume 46, Issue 22, 14 December 2018, Page e134, https://doi.org/10.1093/nar/gky783
Published: 03 September 2018
Journal Article

Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck Open Access

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Araceli Lamelas and others
Genome Biology and Evolution, Volume 10, Issue 8, August 2018, Pages 2102–2109, https://doi.org/10.1093/gbe/evy152
Published: 27 July 2018
Journal Article

pyseer: a comprehensive tool for microbial pangenome-wide association studies Open Access

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John A Lees and others
Bioinformatics, Volume 34, Issue 24, December 2018, Pages 4310–4312, https://doi.org/10.1093/bioinformatics/bty539
Published: 02 July 2018
Journal Article

Phase-variable methylation and epigenetic regulation by type I restriction–modification systems Open Access

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Megan De Ste Croix and others
FEMS Microbiology Reviews, Volume 41, Issue Supp_1, August 2017, Pages S3–S15, https://doi.org/10.1093/femsre/fux025
Published: 17 August 2017
Journal Article

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination Open Access

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Rafał J. Mostowy and others
Molecular Biology and Evolution, Volume 34, Issue 10, October 2017, Pages 2537–2554, https://doi.org/10.1093/molbev/msx173
Published: 08 June 2017
Journal Article

Variants of AbGRI3 carrying the armA gene in extensively antibiotic-resistant Acinetobacter baumannii from Singapore Open Access

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Grace A. Blackwell and others
Journal of Antimicrobial Chemotherapy, Volume 72, Issue 4, April 2017, Pages 1031–1039, https://doi.org/10.1093/jac/dkw542
Published: 10 January 2017
Journal Article

Association of Pneumococcal Protein Antigen Serology With Age and Antigenic Profile of Colonizing Isolates Get access

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Taj Azarian and others
The Journal of Infectious Diseases, Volume 215, Issue 5, 1 March 2017, Pages 713–722, https://doi.org/10.1093/infdis/jiw628
Published: 29 December 2016