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Authors: Matthias Bernt
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Journal Article

Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution Open Access

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Iuliia Ozerova and others
Genome Biology and Evolution, Volume 16, Issue 11, November 2024, evae232, https://doi.org/10.1093/gbe/evae232
Published: 22 October 2024
Journal Article

DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomes Open Access

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Lisa Fiedler and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae072, https://doi.org/10.1093/bioadv/vbae072
Published: 13 May 2024
Journal Article

deepFPlearn+: enhancing toxicity prediction across the chemical universe using graph neural networks Open Access

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Kyriakos Soulios and others
Bioinformatics, Volume 39, Issue 12, December 2023, btad713, https://doi.org/10.1093/bioinformatics/btad713
Published: 27 November 2023
Journal Article

AI for predicting chemical-effect associations at the chemical universe level—deepFPlearn Open Access

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Jana Schor and others
Briefings in Bioinformatics, Volume 23, Issue 5, September 2022, bbac257, https://doi.org/10.1093/bib/bbac257
Published: 17 July 2022
Journal Article

Expanding the Galaxy’s reference data Open Access

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Nagampalli VijayKrishna and others
Bioinformatics Advances, Volume 2, Issue 1, 2022, vbac030, https://doi.org/10.1093/bioadv/vbac030
Published: 29 April 2022
Journal Article

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework Open Access

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Matthias Fahrner and others
GigaScience, Volume 11, 2022, giac005, https://doi.org/10.1093/gigascience/giac005
Published: 15 February 2022
Journal Article

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes Open Access

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Alexander Donath and others
Nucleic Acids Research, Volume 47, Issue 20, 18 November 2019, Pages 10543–10552, https://doi.org/10.1093/nar/gkz833
Published: 04 October 2019
Journal Article

Mitogenomics Reveals a Novel Genetic Code in Hemichordata Open Access

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Yuanning Li and others
Genome Biology and Evolution, Volume 11, Issue 1, January 2019, Pages 29–40, https://doi.org/10.1093/gbe/evy254
Published: 23 November 2018
Journal Article

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes Open Access

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Abdullah H. Sahyoun and others
Nucleic Acids Research, Volume 43, Issue 16, 18 September 2015, Pages 8044–8056, https://doi.org/10.1093/nar/gkv746
Published: 30 July 2015
Journal Article

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements Open Access

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Frank Jühling and others
Nucleic Acids Research, Volume 40, Issue 7, 1 April 2012, Pages 2833–2845, https://doi.org/10.1093/nar/gkr1131
Published: 01 December 2011
Journal Article

CREx: inferring genomic rearrangements based on common intervals Free

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Matthias Bernt and others
Bioinformatics, Volume 23, Issue 21, November 2007, Pages 2957–2958, https://doi.org/10.1093/bioinformatics/btm468
Published: 25 September 2007
Journal Article

Using median sets for inferring phylogenetic trees Free

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Matthias Bernt and others
Bioinformatics, Volume 23, Issue 2, January 2007, Pages e129–e135, https://doi.org/10.1093/bioinformatics/btl300
Published: 15 January 2007