1-20 of 35
Authors: Burkhard Morgenstern
Save search
Sort by
Journal Article

App-SpaM: phylogenetic placement of short reads without sequence alignment Open Access

PDF
Matthias Blanke and Burkhard Morgenstern
Bioinformatics Advances, Volume 1, Issue 1, 2021, vbab027, https://doi.org/10.1093/bioadv/vbab027
Published: 13 October 2021
Journal Article

Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements Open Access

PDF
Morteza Hosseini and others
GigaScience, Volume 9, Issue 5, May 2020, giaa048, https://doi.org/10.1093/gigascience/giaa048
Published: 20 May 2020
Journal Article

‘Multi-SpaM’: a maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees Open Access

PDF
Thomas Dencker and others
NAR Genomics and Bioinformatics, Volume 2, Issue 1, March 2020, lqz013, https://doi.org/10.1093/nargab/lqz013
Published: 30 October 2019
Journal Article

Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences Open Access

PDF
Chris-Andre Leimeister and others
GigaScience, Volume 8, Issue 3, March 2019, giy148, https://doi.org/10.1093/gigascience/giy148
Published: 07 December 2018
Journal Article

Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points Open Access

PDF
Chris-André Leimeister and others
Bioinformatics, Volume 35, Issue 2, January 2019, Pages 211–218, https://doi.org/10.1093/bioinformatics/bty592
Published: 10 July 2018
Journal Article

Fast and accurate phylogeny reconstruction using filtered spaced-word matches Open Access

PDF
Chris-André Leimeister and others
Bioinformatics, Volume 33, Issue 7, April 2017, Pages 971–979, https://doi.org/10.1093/bioinformatics/btw776
Published: 04 January 2017
Journal Article

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches Open Access

PDF
Sebastian Horwege and others
Nucleic Acids Research, Volume 42, Issue W1, 1 July 2014, Pages W7–W11, https://doi.org/10.1093/nar/gku398
Published: 14 May 2014
Journal Article

kmacs: the k -mismatch average common substring approach to alignment-free sequence comparison Open Access

PDF
Chris-Andre Leimeister and Burkhard Morgenstern
Bioinformatics, Volume 30, Issue 14, July 2014, Pages 2000–2008, https://doi.org/10.1093/bioinformatics/btu331
Published: 13 May 2014
Journal Article

Fast alignment-free sequence comparison using spaced-word frequencies Open Access

PDF
Chris-Andre Leimeister and others
Bioinformatics, Volume 30, Issue 14, July 2014, Pages 1991–1999, https://doi.org/10.1093/bioinformatics/btu177
Published: 03 April 2014
Journal Article

DIALIGN at GOBICS—multiple sequence alignment using various sources of external information Open Access

PDF
Layal Al Ait and others
Nucleic Acids Research, Volume 41, Issue W1, 1 July 2013, Pages W3–W7, https://doi.org/10.1093/nar/gkt283
Published: 24 April 2013
Journal Article

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus Open Access

PDF
Anne-Kathrin Schultz and others
Nucleic Acids Research, Volume 40, Issue W1, 1 July 2012, Pages W193–W198, https://doi.org/10.1093/nar/gks414
Published: 16 May 2012
Journal Article

Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses Get access

PDF
Thomas Lingner and others
The Plant Cell, Volume 23, Issue 4, April 2011, Pages 1556–1572, https://doi.org/10.1105/tpc.111.084095
Published: 01 April 2011
Journal Article

DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS Open Access

PDF
Amarendran R. Subramanian and others
Nucleic Acids Research, Volume 38, Issue suppl_2, 1 July 2010, Pages W19–W22, https://doi.org/10.1093/nar/gkq442
Published: 22 May 2010
Journal Article

HIV classification using the coalescent theory Free

PDF
Ingo Bulla and others
Bioinformatics, Volume 26, Issue 11, June 2010, Pages 1409–1415, https://doi.org/10.1093/bioinformatics/btq159
Published: 16 April 2010
Journal Article

A min-cut algorithm for the consistency problem in multiple sequence alignment Free

PDF
Eduardo Corel and others
Bioinformatics, Volume 26, Issue 8, April 2010, Pages 1015–1021, https://doi.org/10.1093/bioinformatics/btq082
Published: 25 February 2010
Journal Article

jpHMM: improving the reliability of recombination prediction in HIV-1 Open Access

PDF
Anne-Kathrin Schultz and others
Nucleic Acids Research, Volume 38, Issue 3, 1 January 2010, Page 1059, https://doi.org/10.1093/nar/gkq015
Published: 01 January 2010
Journal Article

OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences Open Access

PDF
Fabian Schreiber and others
Nucleic Acids Research, Volume 37, Issue suppl_2, 1 July 2009, Pages W185–W188, https://doi.org/10.1093/nar/gkp434
Published: 02 June 2009
Journal Article

jpHMM: Improving the reliability of recombination prediction in HIV-1 Open Access

PDF
Anne-Kathrin Schultz and others
Nucleic Acids Research, Volume 37, Issue suppl_2, 1 July 2009, Pages W647–W651, https://doi.org/10.1093/nar/gkp371
Published: 14 May 2009
Journal Article

AUGUSTUS: ab initio prediction of alternative transcripts Open Access

PDF
Mario Stanke and others
Nucleic Acids Research, Volume 34, Issue suppl_2, 1 July 2006, Pages W435–W439, https://doi.org/10.1093/nar/gkl200
Published: 01 July 2006
Journal Article

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1 Open Access

PDF
Ming Zhang and others
Nucleic Acids Research, Volume 34, Issue suppl_2, 1 July 2006, Pages W463–W465, https://doi.org/10.1093/nar/gkl255
Published: 01 July 2006