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Plant Physiology Cover Image for Volume 166, Issue 2
Volume 166, Issue 2
October 2014
ISSN 0032-0889
EISSN 1532-2548

Volume 166, Issue 2, October 2014

EDITORIAL - FOCUS ISSUE

Niko Geldner and David E. Salt
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 453–454, https://doi.org/10.1104/pp.114.900494

BREAKTHROUGH TECHNOLOGIES - FOCUS ISSUE

Mily Ron and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 455–469, https://doi.org/10.1104/pp.114.239392

Testing tomato gene expression with tagged nuclei and ribosomes and CRISPR/Cas9 genome editing shows conservation of SHORT-ROOT gene function.

Alexander Bucksch and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 470–486, https://doi.org/10.1104/pp.114.243519

Automatic methods developed or reproducible field-based phenotyping allow distinction of genotypes, including 13 newly accessible plant root traits.

Mohsen Zarebanadkouki and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 487–499, https://doi.org/10.1104/pp.114.243212

Neutron radiography traces the transport of deuterated water in soil and roots to reconstruct the water flow across the root tissue and along the xylem.

UPDATES - FOCUS ISSUE

Enric Zelazny and Grégory Vert
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 500–508, https://doi.org/10.1104/pp.114.244475

The dynamics of nutrient transporters and channels emerges as a critical and highly regulated cellular process controlling nutrient uptake and distribution in plant roots.

Ricardo F.H. Giehl and Nicolaus von Wirén
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 509–517, https://doi.org/10.1104/pp.114.245225

Root morphological traits that are relevant for nutrient acquisition are regulated by nutrients and the plant’s nutritional status.

Daniela Ristova and Wolfgang Busch
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 518–527, https://doi.org/10.1104/pp.114.244749

Natural variation of root growth informs on processes that govern root development, responses to nutrient availability, and ion uptake and homeostasis.

Marie Barberon and Niko Geldner
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 528–537, https://doi.org/10.1104/pp.114.246124

Different routes underlie radial transport of nutrients in plant roots and are influenced by the endodermis permeability and the polarity of transporters.

Jonathan A. Atkinson and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 538–550, https://doi.org/10.1104/pp.114.245423

The diversity of postembryonic root forms and their functions add to our understanding of the genes, signals and mechanisms regulating lateral and adventitious root branching in the plant models Arabidopsis and rice.

Neil E. Robbins and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 551–559, https://doi.org/10.1104/pp.114.244871

The endodermis acts as a barrier to solute and water movement but also has important functions in signaling and morphogenesis.

Yoram Kapulnik and Hinanit Koltai
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 560–569, https://doi.org/10.1104/pp.114.244939

Strigolactones play a role in root development, root response to nutrient deficiency, and plant interactions in the rhizosphere.

Paul Kenrick and Christine Strullu-Derrien
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 570–580, https://doi.org/10.1104/pp.114.244517

Exceptionally well-preserved fossils shed light on the earliest roots and their interactions with the environment.

Venkatachalam Lakshmanan and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 689–700, https://doi.org/10.1104/pp.114.245811

The functional soil microbiome is an important parameter in developing a sustainable and effective strategy to increase crop yield and food security.

Clelia De-la-Peña and Víctor M. Loyola-Vargas
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 701–719, https://doi.org/10.1104/pp.114.241810

Roots and microbes secrete organic compounds into the rhizosphere that influence plant productivity.

Sergi Munné-Bosch
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 720–725, https://doi.org/10.1104/pp.114.236000

Roots play a key role in determining long life in perennials.

RESEARCH ARTICLES - FOCUS ISSUE

Patompong Saengwilai and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 581–589, https://doi.org/10.1104/pp.113.232603

Low crown root number improves nitrogen acquisition in maize by enhancing deep soil exploration in low-nitrogen soils.

Johannes Auke Postma and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 590–602, https://doi.org/10.1104/pp.113.233916

The optimal lateral root branching density in the maize root system depends on the relative availability of nitrate (a mobile soil resource) and phosphorus (an immobile soil resource), with the optimum shifting to more branches when the nitrate-to-phosphorus ratio is high.

Likai Wang and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 603–613, https://doi.org/10.1104/pp.114.240929

Cellular and molecular events are inherent to the formation and development of the root cap in rice.

Gregory S. Maloney and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 614–631, https://doi.org/10.1104/pp.114.240507

Flavonols contribute to lateral root development through the regulation of auxin transport and root hair and they modulate the levels of reactive oxygen species.

Robert Kumpf and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 632–643, https://doi.org/10.1104/pp.114.244798

A histone Lys methyltransferase gene is expressed in the root stem cell niche and contributes to coordinated divisions in the immediate cell lineage originating from the same stem cell.

Chang Zhang and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 644–658, https://doi.org/10.1104/pp.114.248542

Both abscisic acid and a nitrate transporter regulate the production of ROS and the expression of superoxide-generating NADPH oxidase enzymes to regulate root elongation.

Barbara Hufnagel and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 659–677, https://doi.org/10.1104/pp.114.243949

Sorghum homologs of a rice gene contributing to P-starvation tolerance enhance P uptake and crop performance in low-P soils via modulation of root system morphology and architecture.

Amar Pal Singh and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 678–688, https://doi.org/10.1104/pp.114.245019

Pi deprivation shifts the subcellular distribution of two key brassinosteroid-related transcriptional effectors to trigger shallower root system architecture.

Patompong Saengwilai and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 726–735, https://doi.org/10.1104/pp.114.241711

Abundant root cortical aerenchyma improves plant growth under nitrogen-limiting conditions by decreasing root metabolic costs, enhancing soil exploration in deep soil strata, thereby increasing nitrogen acquisition at greater depths.

Boris Rewald and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 736–745, https://doi.org/10.1104/pp.114.240267

Extended branching order classification describes morphological variability in root systems and respiration better than traditional root diameter classes or root orders alone.

ON THE INSIDE

Peter V. Minorsky
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 746–747, https://doi.org/10.1104/pp.114.900495

COMMENTARIES

Alice Y. Cheung and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 748–750, https://doi.org/10.1104/pp.114.246926

Glycosylphosphatidylinositol-anchor biosynthesis and glycosylphosphatidylinositol modification of proteins are central to coordinated plant development.

Mark G.M. Aarts
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 751–752, https://doi.org/10.1104/pp.114.249490

Root exudation of nicotianamine is required for excess zinc tolerance.

Articles

BIOCHEMISTRY AND METABOLISM

Hans-Henning Kunz and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 753–765, https://doi.org/10.1104/pp.114.241091

An enzyme of cytosolic hexose phosphate metabolism is essential for plant reproduction and important for photosynthesis.

Takuya Miyakawa and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 766–778, https://doi.org/10.1104/pp.114.242636

Ginkbilobin2 is shown to exert antifungal activity through its interaction with a1,2-linked mannose chains of fungal cell wall mannan, which provides clues to the molecular function of the DUF26 protein family.

Meredith C. Schuman and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 779–797, https://doi.org/10.1104/pp.114.247130

Plants expressing two sesquiterpene synthases emitted increased quantities of target volatiles without changes to other volatiles, defense, growth, or yield in transformants or neighboring plants.

Jun Cheng and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1044–1058, https://doi.org/10.1104/pp.114.246876

Diversification of anthocyanins in peach is attributed to glycosylation and methylation.

CELL BIOLOGY

Mathias Schuetz and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 798–807, https://doi.org/10.1104/pp.114.245597

The discrete localization of laccases to secondary cell walls directs lignification in protoxylem.

Amr M. El Zawily and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 808–828, https://doi.org/10.1104/pp.114.243824

Disruption of intermitochondrial association affects mitochondrial quality control, leading to mitochondrial stress, cell death, and strong growth defects.

ECOPHYSIOLOGY AND SUSTAINABILITY

Lawren Sack and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 829–838, https://doi.org/10.1104/pp.114.237503

Measurements of leaf vein length per area do not increase systematically with image magnification, contrary to a recent claim, given appropriate attention toward accuracy and precision.

Munkhtsetseg Tsednee and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 839–852, https://doi.org/10.1104/pp.114.241224

Root secretion of nicotianamine from zinc-hyperaccumulating Arabidopsis halleri facilitates zinc hypertolerance through coordinating zinc uptake and iron homeostasis in roots.

Kaidala Ganesha Srikanta Dani and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1059–1072, https://doi.org/10.1104/pp.114.246207

Volatile isoprenoids emitted by plants, enhanced by photosynthesis under drought, have a significant influence on ozone pollution and global climate.

GENES, DEVELOPMENT AND EVOLUTION

Yingtian Deng and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 853–868, https://doi.org/10.1104/pp.114.242560

Two mitochondrial translocases are essential for the division during early embryo and endosperm development in Arabidopsis.

Xiaoyong Sun and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 869–878, https://doi.org/10.1104/pp.114.241604

Analysis of 61 RNA-seq samples reveals the existence of common, rare, and nondetectable transcripts, including ubiquitous transcripts, dominant/subordinate transcripts, and switch transcripts, in terms of their expression and transcript ratio.

Hao Ji and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 879–888, https://doi.org/10.1104/pp.114.248153

An ATP-dependent binding cassette transporter contributes to plant resistance to infection by Pseudomonas syringae and tolerance of abscisic acid.

Hannetz Roschzttardtz and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 889–902, https://doi.org/10.1104/pp.114.246314

A plant-specific protein controls the complexity and connectivity of veins in cotyledons.

Viktor Demko and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 903–919, https://doi.org/10.1104/pp.114.243758

A proposed regulatory loop segment of the DEK1 transmembrane domain is required for gametophore patterning in Physcomitrella patens.

MEMBRANES, TRANSPORT AND BIOENERGETICS

Marta Renato and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 920–933, https://doi.org/10.1104/pp.114.243931

Tomato fruit chromoplasts exhibit a respiratory process linked to ATP synthesis that uses NAD(P)H as electron donors and represents 25% of total ripe fruit respiration.

Qian Qian Mao and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 934–944, https://doi.org/10.1104/pp.114.243766

Cadmium inhibits controlled nitrate uptake by roots, but this has the beneficial effect of reducing cadmium entry into roots.

Tianyuan Yang and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 945–959, https://doi.org/10.1104/pp.114.246520

A high-affinity rice potassium transporter plays a major role in K acquisition by roots faced with low external K and in K upward transport from roots to shoots in K-deficient rice plants.

Cécile Lefoulon and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 960–975, https://doi.org/10.1104/pp.114.244319

Manipulating the electrostatic charge network that stabilizes the voltage sensor of the KAT1 K+ channel displaces channel gating across more than 140 mV within the physiological voltage range.

Madeline C. Mitchell and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1073–1082, https://doi.org/10.1104/pp.114.246918

In synchronized Chlamydomonas reinhardtii cells, the carbon-concentrating mechanism is induced prior to dawn, which coincides with the relocalization of key proteins to the chloroplast pyrenoid.

SIGNALLING AND RESPONSE

Su-Hwan Kwak and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 976–987, https://doi.org/10.1104/pp.114.247288

A single receptor-like kinase exhibits distinct signaling requirements to mediate different developmental events in Arabidopsis.

Marta Bjornson and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 988–996, https://doi.org/10.1104/pp.114.245944

Unbiased screening through forward and chemical genetics unveils components distinctly regulating the peak time and amplitude of the plant general stress responses.

Marta Pérez-Martín and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 997–1008, https://doi.org/10.1104/pp.114.243659

Alteration of the intracellular redox state during endoplasmic reticulum stress contributes to autophagy activation in Chlamydomonas reinhardtii.

Huoi Ung and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1009–1021, https://doi.org/10.1104/pp.114.248757

A triphosphate tunnel metalloenzyme is a negative regulator in amplification of SA-dependent defense responses.

Nora Marín-de la Rosa and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1022–1032, https://doi.org/10.1104/pp.114.244723

Transcription factors of the APETALA2 superfamily are regulated by DELLAs which represents a cross regulatory node for gibberellins and ethylene to control apical hook opening.

SYSTEMS AND SYNTHETIC BIOLOGY

Nino Nikolovski and others
Plant Physiology, Volume 166, Issue 2, October 2014, Pages 1033–1043, https://doi.org/10.1104/pp.114.245589

A quantitative proteomic approach enables unambiguous protein localization to the plant Golgi apparatus and rank ordering of the Golgi resident proteins by abundance, providing a unique view on the organization of this organelle.

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