Issue navigation
Volume 7, Issue 2, June 2025
ARTdeConv: adaptive regularized tri-factor non-negative matrix factorization for cell type deconvolution
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf046, https://doi.org/10.1093/nargab/lqaf046
GINClus: RNA structural motif clustering using graph isomorphism network
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf050, https://doi.org/10.1093/nargab/lqaf050
Evaluating sequence and structural similarity metrics for predicting shared paralog functions
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf051, https://doi.org/10.1093/nargab/lqaf051
Discovering governing equations of biological systems through representation learning and sparse model discovery
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf048, https://doi.org/10.1093/nargab/lqaf048
Computational Methods for Transcriptome Analysis
TRanscriptome ANalysis of StratifiEd CohorTs (TRANSECT) enables automated assessment of global gene regulation linked to disparate expression in user defined genes and gene sets
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf041, https://doi.org/10.1093/nargab/lqaf041
SciGeneX: enhancing transcriptional analysis through gene module detection in single-cell and spatial transcriptomics data
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf043, https://doi.org/10.1093/nargab/lqaf043
Exploring the latent space of transcriptomic data with topic modeling
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf049, https://doi.org/10.1093/nargab/lqaf049
Identifying similar populations across independent single cell studies without data integration
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf042, https://doi.org/10.1093/nargab/lqaf042
Pipelines and Workflows for Biological Data Analysis
Identifying individuals with rare disease variants by inferring shared ancestral haplotypes from SNP array data
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf033, https://doi.org/10.1093/nargab/lqaf033
Fast analysis of Spatial Transcriptomics (FaST): an ultra lightweight and fast pipeline for the analysis of high resolution spatial transcriptomics
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf044, https://doi.org/10.1093/nargab/lqaf044
Articles
Digenic variant interpretation with hypothesis-driven explainable AI
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf029, https://doi.org/10.1093/nargab/lqaf029
Qarles: a web server for the quick characterization of large sets of genes
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf030, https://doi.org/10.1093/nargab/lqaf030
Reference-free identification and pangenome analysis of accessory chromosomes in a major fungal plant pathogen
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf034, https://doi.org/10.1093/nargab/lqaf034
Meta-analysis of genomic characteristics for antiviral influenza defective interfering particle prioritization
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf031, https://doi.org/10.1093/nargab/lqaf031
Fully haplotyped genome assemblies of healthy individuals reveal variability in 5′ss strength and support by splicing regulatory proteins
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf036, https://doi.org/10.1093/nargab/lqaf036
Unveiling the structural and functional implications of uncharacterized NSPs and variations in the molecular toolkit across arteriviruses
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf035, https://doi.org/10.1093/nargab/lqaf035
Ocelli: an open-source tool for the analysis and visualization of developmental multimodal single-cell data
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf040, https://doi.org/10.1093/nargab/lqaf040
TetRex: a novel algorithm for index-accelerated search of highly conserved motifs
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf039, https://doi.org/10.1093/nargab/lqaf039
Detection of protein structural hotspots using AI distillation and explainability: application to the DAX-1 protein
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf047, https://doi.org/10.1093/nargab/lqaf047
SLAYER: a computational framework for identifying synthetic lethal interactions through integrated analysis of cancer dependencies
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf052, https://doi.org/10.1093/nargab/lqaf052
