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Volume 38, Issue 13, 1 July 2010
Survey and Summary
Transposases are the most abundant, most ubiquitous genes in nature
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4207–4217, https://doi.org/10.1093/nar/gkq140
Computational Biology
Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4218–4230, https://doi.org/10.1093/nar/gkq130
Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4231–4245, https://doi.org/10.1093/nar/gkq162
Gene Regulation, Chromatin and Epigenetics
Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4246–4253, https://doi.org/10.1093/nar/gkq147
Sumoylation of Drosophila SU(VAR)3-7 is required for its heterochromatic function
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4254–4262, https://doi.org/10.1093/nar/gkq168
Identification and characterization of the two isoforms of the vertebrate H2A.Z histone variant
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4263–4273, https://doi.org/10.1093/nar/gkq171
Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4274–4284, https://doi.org/10.1093/nar/gkq174
Gene silencing induced by oxidative DNA base damage: association with local decrease of histone H4 acetylation in the promoter region
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4285–4295, https://doi.org/10.1093/nar/gkq170
Identification and validation of the pathways and functions regulated by the orphan nuclear receptor, ROR alpha1, in skeletal muscle
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4296–4312, https://doi.org/10.1093/nar/gkq180
Targeting of 5-aza-2′-deoxycytidine residues by chromatin-associated DNMT1 induces proteasomal degradation of the free enzyme
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4313–4324, https://doi.org/10.1093/nar/gkq187
Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4325–4336, https://doi.org/10.1093/nar/gkq175
Genome Integrity, Repair and Replication
Genetic instability triggered by G-quadruplex interacting Phen-DC compounds in Saccharomyces cerevisiae
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4337–4348, https://doi.org/10.1093/nar/gkq136
Evidence that MEK1 positively promotes interhomologue double-strand break repair
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4349–4360, https://doi.org/10.1093/nar/gkq137
A rationally designed peptide enhances homologous recombination in vitro and resistance to DNA damaging agents in vivo
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4361–4371, https://doi.org/10.1093/nar/gkq182
Mechanism of sequence-specific template binding by the DNA primase of bacteriophage T7
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4372–4383, https://doi.org/10.1093/nar/gkq205
Molecular Biology
Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4384–4393, https://doi.org/10.1093/nar/gkq148
Optimal design of parallel triplex forming oligonucleotides containing Twisted Intercalating Nucleic Acids—TINA
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4394–4403, https://doi.org/10.1093/nar/gkq188
Nucleic Acid Enzymes
Processive translocation mechanism of the human Bloom’s syndrome helicase along single-stranded DNA
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4404–4414, https://doi.org/10.1093/nar/gkq145
Structure determination of DNA methylation lesions N 1 -meA and N 3 -meC in duplex DNA using a cross-linked protein–DNA system
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4415–4425, https://doi.org/10.1093/nar/gkq129
Duplex structural differences and not 2′-hydroxyls explain the more stable binding of HIV-reverse transcriptase to RNA-DNA versus DNA-DNA
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4426–4435, https://doi.org/10.1093/nar/gkq169
Unusual evolution of a catalytic core element in CCA-adding enzymes
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4436–4447, https://doi.org/10.1093/nar/gkq176
Visualizing helicases unwinding DNA at the single molecule level
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4448–4457, https://doi.org/10.1093/nar/gkq173
RNA
A model for the study of ligand binding to the ribosomal RNA helix h44
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4458–4465, https://doi.org/10.1093/nar/gkq159
Efficient inhibition of miR-155 function in vivo by peptide nucleic acids
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4466–4475, https://doi.org/10.1093/nar/gkq160
A dictionary on microRNAs and their putative target pathways
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4476–4486, https://doi.org/10.1093/nar/gkq167
Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4487–4502, https://doi.org/10.1093/nar/gkq172
Translation of TRAF1 is regulated by IRES-dependent mechanism and stimulated by vincristine
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4503–4513, https://doi.org/10.1093/nar/gkq183
Structural Biology
Insight into F plasmid DNA segregation revealed by structures of SopB and SopB–DNA complexes
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4514–4526, https://doi.org/10.1093/nar/gkq161
Structure of the FoxM1 DNA-recognition domain bound to a promoter sequence
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4527–4538, https://doi.org/10.1093/nar/gkq194
Synthetic Biology and Chemistry
Quantitative design and experimental validation for a single-molecule DNA nanodevice transformable among three structural states
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4539–4546, https://doi.org/10.1093/nar/gkq250
Synergistic effects between analogs of DNA and RNA improve the potency of siRNA-mediated gene silencing
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Pages 4547–4557, https://doi.org/10.1093/nar/gkq181
Methods Online
Combination of RNA interference and U1 inhibition leads to increased inhibition of gene expression
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e136, https://doi.org/10.1093/nar/gkq299
Titration-free massively parallel pyrosequencing using trace amounts of starting material
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e137, https://doi.org/10.1093/nar/gkq332
A fluorescence-based reporter substrate for monitoring RNA editing in trypanosomatid pathogens
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e138, https://doi.org/10.1093/nar/gkq333
Computational generation and screening of RNA motifs in large nucleotide sequence pools
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e139, https://doi.org/10.1093/nar/gkq282
Designing small multiple-target artificial RNAs
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e140, https://doi.org/10.1093/nar/gkq354
In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e141, https://doi.org/10.1093/nar/gkq377
Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e142, https://doi.org/10.1093/nar/gkq368
Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page e143, https://doi.org/10.1093/nar/gkq390
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 38 ISSUE 13 2010
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page i, https://doi.org/10.1093/nar/gkq694
Nucleic Acids Research
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page ii, https://doi.org/10.1093/nar/gkq693
Subscriptions
Nucleic Acids Research, Volume 38, Issue 13, 1 July 2010, Page iii, https://doi.org/10.1093/nar/gkq695
