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Volume 37, Issue 10, 1 June 2009
Survey and Summary
Theoretical models of DNA topology simplification by type IIA DNA topoisomerases
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3125–3133, https://doi.org/10.1093/nar/gkp250
Computational Biology
Prediction of novel microRNA genes in cancer-associated genomic regions—a combined computational and experimental approach
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3276–3287, https://doi.org/10.1093/nar/gkp120
Gene Regulation, Chromatin and Epigenetics
CK2 phosphorylation of the PRH/Hex homeodomain functions as a reversible switch for DNA binding
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3288–3300, https://doi.org/10.1093/nar/gkp197
Transcription regulation of restriction-modification system Esp1396I
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3354–3366, https://doi.org/10.1093/nar/gkp210
Linker histone H1 is present in centromeric chromatin of living human cells next to inner kinetochore proteins
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3391–3406, https://doi.org/10.1093/nar/gkp199
Genome Integrity, Repair and Replication
XRCC1 interacts with the p58 subunit of DNA Pol α-primase and may coordinate DNA repair and replication during S phase
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3177–3188, https://doi.org/10.1093/nar/gkp144
DIDS, a chemical compound that inhibits RAD51-mediated homologous pairing and strand exchange
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3367–3376, https://doi.org/10.1093/nar/gkp200
Involvement of Exo1b in DNA damage-induced apoptosis
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3452–3463, https://doi.org/10.1093/nar/gkp194
Genomics
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3189–3201, https://doi.org/10.1093/nar/gkp183
Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3407–3417, https://doi.org/10.1093/nar/gkp172
Molecular Biology
New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3215–3229, https://doi.org/10.1093/nar/gkp159
Phosphate control over nitrogen metabolism in Streptomyces coelicolor: direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3230–3242, https://doi.org/10.1093/nar/gkp162
Evolutionary changes in the Leishmania eIF4F complex involve variations in the eIF4E–eIF4G interactions
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3243–3253, https://doi.org/10.1093/nar/gkp190
A WW-like module in the RAG1 N-terminal domain contributes to previously unidentified protein–protein interactions
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3301–3309, https://doi.org/10.1093/nar/gkp192
Elevated polyamines induce c-MYC overexpression by perturbing quadruplex–WC duplex equilibrium
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3321–3331, https://doi.org/10.1093/nar/gkp196
Cotranscriptional recruitment of the nuclear poly(A)-binding protein Pab2 to nascent transcripts and association with translating mRNPs
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3418–3430, https://doi.org/10.1093/nar/gkp207
Nucleic Acid Enzymes
Elucidating the mechanism of DNA-dependent ATP hydrolysis mediated by DNA-dependent ATPase A, a member of the SWI2/SNF2 protein family
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3332–3341, https://doi.org/10.1093/nar/gkp178
Type I restriction endonucleases are true catalytic enzymes
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3377–3390, https://doi.org/10.1093/nar/gkp195
Human DNA polymerase β polymorphism, Arg137Gln, impairs its polymerase activity and interaction with PCNA and the cellular base excision repair capacity
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3431–3441, https://doi.org/10.1093/nar/gkp201
RNA
A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3134–3142, https://doi.org/10.1093/nar/gkp119
A conserved 3′ extension in unusual group II introns is important for efficient second-step splicing
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3202–3214, https://doi.org/10.1093/nar/gkp186
Peculiarities of piRNA-mediated post-transcriptional silencing of Stellate repeats in testes of Drosophila melanogaster
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3254–3263, https://doi.org/10.1093/nar/gkp167
C19MC microRNAs are processed from introns of large Pol-II, non-protein-coding transcripts
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3464–3473, https://doi.org/10.1093/nar/gkp205
Structural Biology
Structural insights into the cooperative binding of SeqA to a tandem GATC repeat
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3143–3152, https://doi.org/10.1093/nar/gkp151
Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3153–3164, https://doi.org/10.1093/nar/gkp157
Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3165–3176, https://doi.org/10.1093/nar/gkp165
Self-association of short DNA loops through minor groove C:G:G:C tetrads
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3264–3275, https://doi.org/10.1093/nar/gkp191
Direct experimental evidence for quadruplex–quadruplex interaction within the human ILPR
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3310–3320, https://doi.org/10.1093/nar/gkp181
The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3342–3353, https://doi.org/10.1093/nar/gkp187
Structural basis for the specialization of Nur, a nickel-specific Fur homolog, in metal sensing and DNA recognition
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Pages 3442–3451, https://doi.org/10.1093/nar/gkp198
Methods Online
Genome-wide de novo prediction of cis-regulatory binding sites in prokaryotes
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e72, https://doi.org/10.1093/nar/gkp248
Assessment of the optimization of affinity and specificity at protein–DNA interfaces
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e73, https://doi.org/10.1093/nar/gkp242
Identification of HCV protease inhibitor resistance mutations by selection pressure-based method
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e74, https://doi.org/10.1093/nar/gkp251
A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e75, https://doi.org/10.1093/nar/gkp282
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e76, https://doi.org/10.1093/nar/gkp285
Labeled microRNA pull-down assay system: an experimental approach for high-throughput identification of microRNA-target mRNAs
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page e77, https://doi.org/10.1093/nar/gkp274
Retraction
Escherichia coli HU protein has a role in the repair of abasic sites in DNA
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page 3474, https://doi.org/10.1093/nar/gkp454
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 37 ISSUE 10 2009
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page i, https://doi.org/10.1093/nar/gkp523
Nucleic Acids Research
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page ii, https://doi.org/10.1093/nar/gkp521
Subscriptions
Nucleic Acids Research, Volume 37, Issue 10, 1 June 2009, Page iii, https://doi.org/10.1093/nar/gkp522
