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Keywords: transcription
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CCAAT/Enhancer-Binding Proteins α and β Regulate Ovulation and Gene Expression via Dose- and Stage-Dependent Mechanisms
Hanxue Zhang and others
Endocrinology, bqaf081, https://doi.org/10.1210/endocr/bqaf081
Published: 28 April 2025
...) are transcription factors acutely induced by the luteinizing hormone surge and crucial for ovulation and granulosa cell luteinization. However, biological processes and their regulatory mechanisms downstream of C/EBPα/β in the preovulatory ovary are not completely understood. To address this knowledge gap, we...
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Ubiquitination of the PpMADS2 transcription factor controls linalool production during UV-B irradiation in detached peach fruit
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Chunyan Wei and others
Plant Physiology, kiaf159, https://doi.org/10.1093/plphys/kiaf159
Published: 24 April 2025
... remain unclear. By integrating proteomic, transcriptomic and metabolomic data from peach fruit following UV-B irradiation, we discovered that the detached fruit responds to UV-B by suppressing the biosynthesis of the flavor-related monoterpene linalool. We identified PpMADS2, a transcription factor...
Journal Article
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Skeletal Site-Specific Variations in CD11b+ Cells: Insights from Single-Cell RNA Sequencing of the Mandible and Femur
Rachel Clark and others
in
JBMR Plus
JBMR Plus, ziaf074, https://doi.org/10.1093/jbmrpl/ziaf074
Published: 24 April 2025
... of cells that can differentiate into osteoclasts have enhanced inflammatory gene expression at least partly due to changes in their chromatin. Overall, this data suggests that environmental signals at different skeletal sites may regulate the expression of genes. inflammation transcription osteoclasts...
Journal Article
AI-assisted transcription of YouTube videos on penile enlargement: analysis of their text quality and readability
Mehmet Fatih Şahin and others
Sexual Medicine, Volume 13, Issue 2, April 2025, qfaf023, https://doi.org/10.1093/sexmed/qfaf023
Published: 21 April 2025
... in videos should be easier to understand. Strengths and Limitations This study is the first scientific analysis of YouTube video transcripts on PE using AI, focusing specifically on English content, which limits its applicability to non-English speakers and other platforms. Exclusions of silent...
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Beyond the ends: Potential implications of Telomeric Repeat-Containing RNA (TERRA) for CNS Diseases
Hadjer Namous and Raghu Vemuganti
Journal of Molecular Cell Biology, mjaf013, https://doi.org/10.1093/jmcb/mjaf013
Published: 16 April 2025
... Transcription Brain Damage O RIGIN A L U N EDITED M AN U SCRIPT Beyond the ends: Potential implications of Telomeric Repeat-Containing RNA (TERRA) for CNS Diseases Hadjer Namous1, Raghu Vemuganti1,2 1Department of Neurological Surgery, University of Wisconsin-Madison, Madison, WI, 53792, USA and 2William S...
Journal Article
Cell-free biosensor with automated acoustic liquid handling for rapid and scalable characterization of cellobiohydrolases on microcrystalline cellulose
Taeok Kim and others
Synthetic Biology, Volume 10, Issue 1, 2025, ysaf005, https://doi.org/10.1093/synbio/ysaf005
Published: 14 April 2025
..., accelerates testing, and facilitates reliable large-scale screening. These findings highlight its potential to overcome current HTS limitations, advancing enzyme screening and accelerating the Design-Build-Test-Learn cycle for sustainable biomanufacturing. Graphical Abstract transcription factor-based...
Journal Article
Gain-of-function enhancer variant near KCNB1 causes familial ST-depression syndrome
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Alex Hørby Christensen and others
European Heart Journal, ehaf213, https://doi.org/10.1093/eurheartj/ehaf213
Published: 10 April 2025
... families. The variant creates a MEF2-binding site and presence of the variant allele or MEF2 co-expression enhanced transcriptional activity. dCas9-activator/repressor assays showed that KCNB1 was the only gene consistently regulated by the locus and 4C experiments in AC16 cells and human muscle...
Journal Article
An improved cytological assay for R-loop detection in Saccharomyces cerevisiae utilizing a catalytically inactive RNase H
Jordan Sanders and others
G3 Genes|Genomes|Genetics, jkaf072, https://doi.org/10.1093/g3journal/jkaf072
Published: 10 April 2025
... reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract R-loops (RNA/DNA hybrids) are caused by defects in RNA transcription or processing, and their level heavily correlates with genome instability and human disease. Most current yeast methods for R...
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MpmiR319 promotes gemma/gemma cup formation in the liverwort Marchantia polymorpha
Kazutaka Futagami and others
Journal of Experimental Botany, eraf148, https://doi.org/10.1093/jxb/eraf148
Published: 09 April 2025
...Kazutaka Futagami; Masayuki Tsuzuki; Mika Yoshida; Yuichiro Watanabe liverwort Marchantia polymorpha gemma gemma cup notch microRNA RKD transcription factor R2R3MYB transcription factor Accepted Manuscript MpmiR319 promotes gemma/gemma cup formation in the liverwort Marchantia...
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The sunflower transcription factor HaHB11 increases soybean grain number and heat tolerance across multi-season field trials
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Jesica Raineri and others
Journal of Experimental Botany, eraf088, https://doi.org/10.1093/jxb/eraf088
Published: 09 April 2025
...Jesica Raineri; Enrique Montero Bulacio; Mabel Campi; Margarita Portapila; María Elena Otegui; Raquel Lía Chan Accepted Manuscript The sunflower transcription factor HaHB11 increases soybean grain number and heat tolerance across multi-season field trials Raineri, Jesicaa; Montero Bulacio, Enriqueb...
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Glycolysis Induces Abnormal Transcription Through Histone Lactylation in T-lineage Acute Lymphoblastic Leukemia
Wenyan Wu and others
Genomics, Proteomics & Bioinformatics, qzaf029, https://doi.org/10.1093/gpbjnl/qzaf029
Published: 07 April 2025
..., and transcriptional dysregulation are two hallmarks of tumors. However, the precise influence of lactate on epigenetic modifications at a genome-wide level and its impact on gene transcription in tumor cells remain unclear. We conducted an analysis of genome-wide histone H3 lysine 18 lactylation (H3K18la...
Journal Article
Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development
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Paja Sijacic and others
in
Genetics
Genetics, iyaf065, https://doi.org/10.1093/genetics/iyaf065
Published: 03 April 2025
... at genes still transcriptionally misregulated in h2a.z + HsH2A.Z.1 plants. Of the overexpressed genes in h2a.z plants not complemented by HsH2A.Z.1, GO analysis identified an enrichment for secondary metabolism pathway genes, while GO analysis of underexpressed genes did...
Journal Article
Regulation of meiotic gene expression is functional in the human fungal pathogen Candida glabrata
Natalia Klimova and others
FEMS Yeast Research, Volume 25, 2025, foaf018, https://doi.org/10.1093/femsyr/foaf018
Published: 02 April 2025
... Graphical Abstract Figure. In a human fungal pathogen, the putative transcription factor Zcf11 has no known function. Here, it is shown that Zcf11 is a negative regulator of genes involved in meiosis. 28 11 2024 22 03 2025 01 04 2025 22 04 2025 © The Author(s...
Journal Article
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Calmodulin1 (CsCAM1) - Calmodulin binding transcription activator (CsCAMTA) negatively regulates the transcription of fluoride export gene CsFEX1 to mediate fluoride transport in tea plants (Camellia sinensis)
Da Li and others
Journal of Experimental Botany, eraf113, https://doi.org/10.1093/jxb/eraf113
Published: 01 April 2025
... binding transcription activator (CsCAMTA) protein was functionally characterized based on yeast one-hybrid screening assay and previous transcriptomics. CsCAMTA is mainly localized in the nucleus and binds to the G-box (CACGTC) cis-element in the CsFEX1 promoter as a transcription...
Journal Article
Rapidly imparting chiroptical properties to an achiral azobenzene derivative using helical nanofibers composed of an amidoamine derivative with an unsaturated hydrocarbon
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Tomoki Ito and others
Chemistry Letters, Volume 54, Issue 4, April 2025, upaf069, https://doi.org/10.1093/chemle/upaf069
Published: 27 March 2025
... derivative chiral transcription helical nanofibers Japan Society for the Promotion of Science 10.13039/501100001691 KAKENHI 10.13039/501100001691 19K22116 21K14504 24K17592 The synthetic organic chemistry of chiral molecules is a critical research area due to its essential role in developing...
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ZIC1 transcription factor overexpression in segmental bone defects is associated with brown adipogenic and osteogenic differentiation
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Neelima Thottappillil and others
in
Stem Cells
Stem Cells, sxaf013, https://doi.org/10.1093/stmcls/sxaf013
Published: 27 March 2025
...Neelima Thottappillil; Zhao Li; Xin Xing; Shreya Arondekar; Manyu Zhu; Masnsen Cherief; Qizhi Qin; Myles Zhou; Mary Archer; Kristen Broderick; Bruno Pèault; Min Lee; Aaron W James Abstract Transcriptional factor regulation is central to the lineage commitment of stem/ progenitor cells...
Journal Article
Transcriptional and chromatin accessibility landscapes of hematopoiesis in a mouse model of breast cancer
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Changxu Fan and others
The Journal of Immunology, vkaf026, https://doi.org/10.1093/jimmun/vkaf026
Published: 27 March 2025
... may occur at the hematopoietic stem and progenitor cells (HSPCs) level to elicit hematopoietic changes. However, our understanding of the underlying molecular mechanisms remains incomplete. Here, we characterize the transcriptional and chromatin accessibility landscapes of bone marrow and splenic...
Journal Article
Evolution of a Plasmid Regulatory Circuit Ameliorates Plasmid Fitness Cost
Clinton A Elg and others
Molecular Biology and Evolution, Volume 42, Issue 4, April 2025, msaf062, https://doi.org/10.1093/molbev/msaf062
Published: 26 March 2025
... decreased transcription of the global plasmid regulators (korA, korB, and korC) and numerous genes in their regulons. This is consistent with our findings that Upf31 represses its own transcription. It also caused secondary transcriptional changes in many chromosomal genes...
Journal Article
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SWI/SNF complexes govern ontology-specific transcription factor function in MYC-subtype atypical teratoid rhabdoid tumor
Cody L Nesvick and others
Neuro-Oncology, noaf081, https://doi.org/10.1093/neuonc/noaf081
Published: 23 March 2025
... While most ATRTs share the feature of SMARCB1 loss and genomic stability, at least three major molecular subgroups of SMARCB1-altered ATRT exist (ATRT-MYC, ATRT-TYR and ATRT-SHH).25,26 As the cell lines used in the above analyses transcriptionally classify as ATRTMYC (see Methods), we further assessed...
Journal Article
Dynamic regulation of murine RNA polymerase III transcription during heat shock stress
Thomas F Nguyen and others
in
Genetics
Genetics, iyaf042, https://doi.org/10.1093/genetics/iyaf042
Published: 18 March 2025
.../licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Cells respond to many different types of stresses by overhauling gene expression patterns, both at the transcriptional and translational levels. Under...