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Research Article 2 May 2025

Characterization of Chronic Lymphocytic Leukemia Immunoglobulin Rearrangements from Partial Read Sequencing

Azahara Fuentes-Trillo and others

Genomics, Proteomics & Bioinformatics, qzaf041, https://doi.org/10.1093/gpbjnl/qzaf041
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Research Article 2 May 2025

Biomedical Big Data and Artificial Intelligence in Blood

Fuhong He and others

Genomics, Proteomics & Bioinformatics, qzaf043, https://doi.org/10.1093/gpbjnl/qzaf043
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Research Article 29 April 2025

The Pathogen Adaptation of HLA Alleles and the Correlation with Autoimmune Diseases in the Han Chinese

Shuai Liu and others

Genomics, Proteomics & Bioinformatics, qzaf038, https://doi.org/10.1093/gpbjnl/qzaf038
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Research Article 29 April 2025

Integrated Computational and Functional Screening Identify G9a Inhibitors for SETD2-Mutant Leukemia

Ya Zhang and others

Genomics, Proteomics & Bioinformatics, qzaf035, https://doi.org/10.1093/gpbjnl/qzaf035
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Research Article 29 April 2025

Integrative Genome-wide Association Meta-analysis of Aortic Aneurysm and Dissection Identifies Five Novel Genes

Yifan Du and others

Genomics, Proteomics & Bioinformatics, qzaf039, https://doi.org/10.1093/gpbjnl/qzaf039
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Research Article 29 April 2025

UNISOM: Unified Somatic Calling and Machine Learning-based Classification Enhance the Discovery of CHIP

Shulan Tian and others

Genomics, Proteomics & Bioinformatics, qzaf040, https://doi.org/10.1093/gpbjnl/qzaf040
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Research Article 29 April 2025

Identifying Leukemia-related Genes based on Time-series Dynamical Network by Integrating Differential Genes

Jin A and others

Genomics, Proteomics & Bioinformatics, qzaf037, https://doi.org/10.1093/gpbjnl/qzaf037
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Research Article 23 April 2025

CRISPR Technology and Its Emerging Applications

Xuejing Zhang and others

Genomics, Proteomics & Bioinformatics, qzaf034, https://doi.org/10.1093/gpbjnl/qzaf034
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Research Article 21 April 2025

TRAIT: A Comprehensive Database for T-cell Receptor–Antigen Interactions

Mengmeng Wei and others

Genomics, Proteomics & Bioinformatics, qzaf033, https://doi.org/10.1093/gpbjnl/qzaf033
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Research Article 15 April 2025

GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes

Di Zhu and others

Genomics, Proteomics & Bioinformatics, qzaf032, https://doi.org/10.1093/gpbjnl/qzaf032
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Research Article 12 April 2025

PlateletBase: A Comprehensive Knowledgebase for Platelet Research and Disease Insights

Huaichao Luo and others

Genomics, Proteomics & Bioinformatics, qzaf031, https://doi.org/10.1093/gpbjnl/qzaf031
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Research Article 8 April 2025

Plasma Proteomic Profiling Reveals ITGA2B as A Key Regulator of Heart Health in High-altitude Settlers

Yihao Wang and others

Genomics, Proteomics & Bioinformatics, qzaf030, https://doi.org/10.1093/gpbjnl/qzaf030
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Research Article 7 April 2025

Glycolysis Induces Abnormal Transcription Through Histone Lactylation in T-lineage Acute Lymphoblastic Leukemia

Wenyan Wu and others

Genomics, Proteomics & Bioinformatics, qzaf029, https://doi.org/10.1093/gpbjnl/qzaf029
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Research Article 4 April 2025

Cell-free DNA Fragmentomics Assay to Discriminate the Malignancy of Breast Nodules and Evaluate Treatment Response

Jiaqi Liu and others

Genomics, Proteomics & Bioinformatics, qzaf028, https://doi.org/10.1093/gpbjnl/qzaf028
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Research Article 27 March 2025

Clonal Hematopoietic Mutations in Plasma Cell Disorders: Clinical Subgroups and Shared Pathogenesis

Xuezhu Wang and others

Genomics, Proteomics & Bioinformatics, qzaf027, https://doi.org/10.1093/gpbjnl/qzaf027
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Research Article 19 March 2025

HemAtlas: A Multi-omics Hematopoiesis Database

Zhixin Kang and others

Genomics, Proteomics & Bioinformatics, qzaf026, https://doi.org/10.1093/gpbjnl/qzaf026
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Research Article 17 March 2025

Harnessing the Foundation Model for Exploration of Single-cell Expression Atlases in Plants

Guangshuo Cao and others

Genomics, Proteomics & Bioinformatics, qzaf024, https://doi.org/10.1093/gpbjnl/qzaf024
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Research Article 17 March 2025

LCORL and STC2 Variants Increase Body Size and Growth Rate in Cattle and Other Animals

Fengting Bai and others

Genomics, Proteomics & Bioinformatics, qzaf025, https://doi.org/10.1093/gpbjnl/qzaf025
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Research Article 13 March 2025

The High Expression of PD-1 Defines A Subpopulation of Tfh Cells Responding to COVID-19 Vaccine in Humans

Jingxin Guo and others

Genomics, Proteomics & Bioinformatics, qzaf019, https://doi.org/10.1093/gpbjnl/qzaf019
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Research Article 10 March 2025

Haplotype-based Pangenomics: A Blueprint for Climate Adaptation in Plants

Wanfei Liu and Peng Cui

Genomics, Proteomics & Bioinformatics, qzaf023, https://doi.org/10.1093/gpbjnl/qzaf023
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Research Article 10 March 2025

High-quality Population-specific Haplotype-resolved Reference Panel in the Genomic and Pangenomic Eras

Qingxin Yang and others

Genomics, Proteomics & Bioinformatics, qzaf022, https://doi.org/10.1093/gpbjnl/qzaf022
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Research Article 5 March 2025

HumanTestisDB: A Comprehensive Atlas of Testicular Transcriptomics and Cellular Interactions

Mengjie Wang and others

Genomics, Proteomics & Bioinformatics, qzaf015, https://doi.org/10.1093/gpbjnl/qzaf015
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Research Article 4 March 2025

PhaSeDis: A Manually Curated Database of Phase Separation–Disease Associations and Corresponding Small Molecules

Taoyu Chen and others

Genomics, Proteomics & Bioinformatics, qzaf014, https://doi.org/10.1093/gpbjnl/qzaf014
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Research Article 4 March 2025

Biological Data Resources and Machine Learning Frameworks for Hematology Research

Ying Yi and others

Genomics, Proteomics & Bioinformatics, qzaf021, https://doi.org/10.1093/gpbjnl/qzaf021
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Research Article 4 March 2025

Single-cell Atlas of Developing Mouse Palates Reveals Cellular and Molecular Transitions in Periderm Cell Fate

Wenbin Huang and others

Genomics, Proteomics & Bioinformatics, qzaf013, https://doi.org/10.1093/gpbjnl/qzaf013
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Research Article 4 March 2025

A Developmental Gene Expression Atlas Reveals Novel Biological Basis of Complex Phenotypes in Sheep

Bingru Zhao and others

Genomics, Proteomics & Bioinformatics, qzaf020, https://doi.org/10.1093/gpbjnl/qzaf020
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Research Article 28 February 2025

PIGOME: An Integrated and Comprehensive Multi-omics Database for Pig Functional Genomics Studies

Guohao Han and others

Genomics, Proteomics & Bioinformatics, qzaf016, https://doi.org/10.1093/gpbjnl/qzaf016
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Research Article 28 February 2025

LigExtract: Large-scale Automated Identification of Ligands from Protein Structures in the Protein Data Bank

Natália Aniceto and others

Genomics, Proteomics & Bioinformatics, qzaf018, https://doi.org/10.1093/gpbjnl/qzaf018
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Research Article 27 February 2025

Challenges in AI-driven Biomedical Multimodal Data Fusion and Analysis

Junwei Liu and others

Genomics, Proteomics & Bioinformatics, qzaf011, https://doi.org/10.1093/gpbjnl/qzaf011
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Research Article 27 February 2025

Evaluative Methodology for HRD Testing: Development of Standard Tools for Consistency Assessment

Zheng Jia and others

Genomics, Proteomics & Bioinformatics, qzaf017, https://doi.org/10.1093/gpbjnl/qzaf017
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Research Article 22 February 2025

MS-based Solutions for Single Cell Proteomics

Siqi Li and others

Genomics, Proteomics & Bioinformatics, qzaf012, https://doi.org/10.1093/gpbjnl/qzaf012
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Research Article 20 February 2025

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion

Yingke Ma and others

Genomics, Proteomics & Bioinformatics, qzaf010, https://doi.org/10.1093/gpbjnl/qzaf010
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Research Article 18 February 2025

Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data

Wei Zhang and others

Genomics, Proteomics & Bioinformatics, qzaf009, https://doi.org/10.1093/gpbjnl/qzaf009
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Research Article 17 February 2025

NSUN2-mediated HCV RNA m⁵C Methylation Facilitates Viral RNA Stability and Replication

Zhu-Li Li and others

Genomics, Proteomics & Bioinformatics, qzaf008, https://doi.org/10.1093/gpbjnl/qzaf008
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Research Article 13 February 2025

Resolving Leukemia Heterogeneity and Lineage Aberrations with HematoMap

Yuting Dai and others

Genomics, Proteomics & Bioinformatics, qzaf005, https://doi.org/10.1093/gpbjnl/qzaf005
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Research Article 11 February 2025

FarmGTEx TWAS-server: An Interactive Web Server for Customized TWAS Analysis

Zhenyang Zhang and others

Genomics, Proteomics & Bioinformatics, qzaf006, https://doi.org/10.1093/gpbjnl/qzaf006
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Research Article 11 February 2025

Living on the Rocks: Genomic Analysis of Limestone Langurs Provides Novel Insights into the Adaptive Evolution in Extreme Karst Environments

Liu Zhijin and others

Genomics, Proteomics & Bioinformatics, qzaf007, https://doi.org/10.1093/gpbjnl/qzaf007
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Research Article 7 February 2025

Long and Accurate: How HiFi Sequencing is Transforming Genomics

Bo Wang and others

Genomics, Proteomics & Bioinformatics, qzaf003, https://doi.org/10.1093/gpbjnl/qzaf003
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Research Article 7 February 2025

Identification of Small Open Reading Frame Encoded Proteins from the Human Genome

Hitesh Kore and others

Genomics, Proteomics & Bioinformatics, qzaf004, https://doi.org/10.1093/gpbjnl/qzaf004
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Research Article 25 January 2025

HemaScope: A Tool for Analyzing Single-cell and Spatial Transcriptomics Data of Hematopoietic Cells

Zhenyi Wang and others

Genomics, Proteomics & Bioinformatics, qzaf002, https://doi.org/10.1093/gpbjnl/qzaf002
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Research Article 20 January 2025

Characterization of Tumor Antigens from Multi-omics Data: Computational Approaches and Resources

Yunzhe Wang and others

Genomics, Proteomics & Bioinformatics, qzaf001, https://doi.org/10.1093/gpbjnl/qzaf001
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Research Article 26 December 2024

HemaCisDB: An Interactive Database for Analyzing Cis-Regulatory Elements Across Hematopoietic Malignancies

Xinping Cai and others

Genomics, Proteomics & Bioinformatics, qzae088, https://doi.org/10.1093/gpbjnl/qzae088
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Research Article 14 November 2024

VISTA: A Tool for Fast Taxonomic Assignment of Viral Genome Sequences

Tao Zhang and others

Genomics, Proteomics & Bioinformatics, qzae082, https://doi.org/10.1093/gpbjnl/qzae082
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Research Article 3 October 2024

CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer

Jinhua He and others

Genomics, Proteomics & Bioinformatics, qzae067, https://doi.org/10.1093/gpbjnl/qzae067
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Research Article 27 September 2024

Whole-genome Sequencing Association Analysis of Quantitative Platelet Traits in A Large Cohort of β-thalassemia

Xingmin Wang and others

Genomics, Proteomics & Bioinformatics, qzae065, https://doi.org/10.1093/gpbjnl/qzae065
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Research Article 24 June 2024

Reprogramming of RNA m⁶A Modification Is Required for Acute Myeloid Leukemia Development

Weidong Liu and others

Genomics, Proteomics & Bioinformatics, qzae049, https://doi.org/10.1093/gpbjnl/qzae049
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Research Article 2 April 2024

EryDB: A Transcriptomic Profile Database for Erythropoiesis and Erythroid-related Diseases

Guangmin Zheng and others

Genomics, Proteomics & Bioinformatics, qzae029, https://doi.org/10.1093/gpbjnl/qzae029
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Research Article 3 February 2024

NeoTCR: an immunoinformatic database of experimentally-supported functional neoantigen-specific TCR sequences

Weijun Zhou and others

Genomics, Proteomics & Bioinformatics, qzae010, https://doi.org/10.1093/gpbjnl/qzae010
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