Shekeeb S. Mohammad, Rajeshwar Reddy Angiti, Andrew Biggin, Hugo Morales-Briceño, Robert Goetti, Belen Perez-Dueñas, Allison Gregory, Penelope Hogarth, Joanne Ng, Apostolos Papandreou, Kaustuv Bhattacharya, Shamima Rahman, Kristina Prelog, Richard I. Webster, Evangeline Wassmer, Susan Hayflick, John Livingston, Manju Kurian, W. Kling Chong and Russell C. Dale; Basal Ganglia MRI Study Group. Magnetic resonance imaging pattern recognition in childhood bilateral basal ganglia disorders. Brain Communications 2020. doi:10.1093/braincomms/fcaa178.

In the above article, Table 2. has been updated as follows online:

Previous version:

Table 2

Selected MRI changes and clinical features that aid narrowing down diagnostic differentials for disorders with MRI basal ganglia changes.

MRI / Clinical featureDiagnostic differential
ACalcification accompanying brain iron depositionBPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy with increased basal ganglia susceptibilityAceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
CCerebellar atrophy with basal ganglia T2W hyperintensityAFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulfite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
FHypomyelination with increased basal ganglia susceptibilityBPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
GHypomyelination with basal ganglia T2W hyperintensity3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various - particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
IMainly pallidal T2W hyperintensity without striatal abnormalities3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes - monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
JOptic atrophy with increased basal ganglia susceptibilityAP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
KOptic atrophy with basal ganglia T2W hyperintensityGiant axonal neuropathy
Mitochondrial disorders - LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
PRim of T2W hyperintensity around the putamenADEM
ANE
BGE
Encephalitis – Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
ST1W hyperintensities in the basal ganglia - DiffuseEphedrine toxicity
Hypermanganesemia – TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
TT1W hyperintensities in the basal ganglia - PatchyBasal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy
MRI / Clinical featureDiagnostic differential
ACalcification accompanying brain iron depositionBPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy with increased basal ganglia susceptibilityAceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
CCerebellar atrophy with basal ganglia T2W hyperintensityAFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulfite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
FHypomyelination with increased basal ganglia susceptibilityBPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
GHypomyelination with basal ganglia T2W hyperintensity3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various - particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
IMainly pallidal T2W hyperintensity without striatal abnormalities3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes - monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
JOptic atrophy with increased basal ganglia susceptibilityAP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
KOptic atrophy with basal ganglia T2W hyperintensityGiant axonal neuropathy
Mitochondrial disorders - LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
PRim of T2W hyperintensity around the putamenADEM
ANE
BGE
Encephalitis – Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
ST1W hyperintensities in the basal ganglia - DiffuseEphedrine toxicity
Hypermanganesemia – TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
TT1W hyperintensities in the basal ganglia - PatchyBasal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy

Abbreviations: ADEM – acute disseminated encephalomyelitis, ANE – Acute necrotizing encephalopathy, BGE – autoimmune basal ganglia encephalitis, BPAN-Beta propeller protein associated degeneration, CoPAN- COASY protein associated neurodegeneration, CP – Cerebral palsy (due to hypoxic ischaemic encephalopathy in term babies), FAHN – FA2H associated neurodegeneration, LHON – Leber’s hereditary optic neuropathy, MEGDEL – 3-methylglutaconic aciduria with sensori-neural deafness, encephalopathy, and Leigh-like syndrome, MMA – methyl malonic acidaemia, MPAN – mitochondrial membrane protein associated neurodegeneration, NMO – neuromyelitis optica spectrum disorder, PDHC – pyruvate dehydrogenase complex deficiency, PKAN – Panthothenate kinase associated degeneration, PLAN – PLA2G6 associated neurodegeneration, SSADH – succinic semialdehyde dehydrogenase deficiency

Table 2

Selected MRI changes and clinical features that aid narrowing down diagnostic differentials for disorders with MRI basal ganglia changes.

MRI / Clinical featureDiagnostic differential
ACalcification accompanying brain iron depositionBPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy with increased basal ganglia susceptibilityAceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
CCerebellar atrophy with basal ganglia T2W hyperintensityAFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulfite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
FHypomyelination with increased basal ganglia susceptibilityBPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
GHypomyelination with basal ganglia T2W hyperintensity3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various - particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
IMainly pallidal T2W hyperintensity without striatal abnormalities3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes - monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
JOptic atrophy with increased basal ganglia susceptibilityAP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
KOptic atrophy with basal ganglia T2W hyperintensityGiant axonal neuropathy
Mitochondrial disorders - LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
PRim of T2W hyperintensity around the putamenADEM
ANE
BGE
Encephalitis – Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
ST1W hyperintensities in the basal ganglia - DiffuseEphedrine toxicity
Hypermanganesemia – TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
TT1W hyperintensities in the basal ganglia - PatchyBasal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy
MRI / Clinical featureDiagnostic differential
ACalcification accompanying brain iron depositionBPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy with increased basal ganglia susceptibilityAceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
CCerebellar atrophy with basal ganglia T2W hyperintensityAFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulfite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
FHypomyelination with increased basal ganglia susceptibilityBPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
GHypomyelination with basal ganglia T2W hyperintensity3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various - particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
IMainly pallidal T2W hyperintensity without striatal abnormalities3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes - monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
JOptic atrophy with increased basal ganglia susceptibilityAP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
KOptic atrophy with basal ganglia T2W hyperintensityGiant axonal neuropathy
Mitochondrial disorders - LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
PRim of T2W hyperintensity around the putamenADEM
ANE
BGE
Encephalitis – Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
ST1W hyperintensities in the basal ganglia - DiffuseEphedrine toxicity
Hypermanganesemia – TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
TT1W hyperintensities in the basal ganglia - PatchyBasal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy

Abbreviations: ADEM – acute disseminated encephalomyelitis, ANE – Acute necrotizing encephalopathy, BGE – autoimmune basal ganglia encephalitis, BPAN-Beta propeller protein associated degeneration, CoPAN- COASY protein associated neurodegeneration, CP – Cerebral palsy (due to hypoxic ischaemic encephalopathy in term babies), FAHN – FA2H associated neurodegeneration, LHON – Leber’s hereditary optic neuropathy, MEGDEL – 3-methylglutaconic aciduria with sensori-neural deafness, encephalopathy, and Leigh-like syndrome, MMA – methyl malonic acidaemia, MPAN – mitochondrial membrane protein associated neurodegeneration, NMO – neuromyelitis optica spectrum disorder, PDHC – pyruvate dehydrogenase complex deficiency, PKAN – Panthothenate kinase associated degeneration, PLAN – PLA2G6 associated neurodegeneration, SSADH – succinic semialdehyde dehydrogenase deficiency

Corrected version:

Table 2

Selected MRI changes and clinical features that aid narrowing down diagnostic differentials for disorders with MRI basal ganglia changes

MRI/clinical featureDiagnostic differential
ACalcification accompanying
brain iron deposition
BPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy witd increased
basal ganglia susceptibility
Aceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
C

Cerebellar atrophy with

 

basal ganglia T2W hyperintensity

MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
AFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulphite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
F

Hypomyelination with increased

 

basal ganglia susceptibility

BPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
G

Hypomyelination with

 

basal ganglia T2W hyperintensity

3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various—particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
I

Mainly pallidal T2W hyperintensity

 

without striatal abnormalities

3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes—monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
J

Optic atrophy with increased

 

basal ganglia susceptibility

AP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
K

Optic atrophy with

 

basal ganglia T2W hyperintensity

Giant axonal neuropathy
Mitochondrial disorders—LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
P

Rim of T2W hyperintensity

 

around the putamen

ADEM
ANE
BGE
Encephalitis—Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
S

T1W hyperintensities

 

in the basal ganglia—Diffuse

Ephedrine toxicity
Hypermanganesemia—TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
T

T1W hyperintensities

 

in the basal ganglia—Patchy

Basal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy
MRI/clinical featureDiagnostic differential
ACalcification accompanying
brain iron deposition
BPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy witd increased
basal ganglia susceptibility
Aceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
C

Cerebellar atrophy with

 

basal ganglia T2W hyperintensity

MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
AFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulphite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
F

Hypomyelination with increased

 

basal ganglia susceptibility

BPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
G

Hypomyelination with

 

basal ganglia T2W hyperintensity

3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various—particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
I

Mainly pallidal T2W hyperintensity

 

without striatal abnormalities

3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes—monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
J

Optic atrophy with increased

 

basal ganglia susceptibility

AP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
K

Optic atrophy with

 

basal ganglia T2W hyperintensity

Giant axonal neuropathy
Mitochondrial disorders—LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
P

Rim of T2W hyperintensity

 

around the putamen

ADEM
ANE
BGE
Encephalitis—Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
S

T1W hyperintensities

 

in the basal ganglia—Diffuse

Ephedrine toxicity
Hypermanganesemia—TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
T

T1W hyperintensities

 

in the basal ganglia—Patchy

Basal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy

ADEM, acute-disseminated encephalomyelitis; ANE, acute necrotizing encephalopathy; BGE, autoimmune basal ganglia encephalitis; BPAN, beta-propeller protein-associated degeneration; CoPAN, COASY protein-associated neurodegeneration; CP, cerebral palsy (due to HIE in term babies); FAHN, FA2H-associated neurodegeneration; LHON, Leber’s hereditary optic neuropathy; MEGDEL, 3-methylglutaconic aciduria with sensori-neural deafness, encephalopathy, and Leigh-like syndrome; MMA, methyl malonic acidaemia; MPAN, mitochondrial membrane protein-associated neurodegeneration; NMO, neuromyelitis optica spectrum disorder; PDHC, pyruvate dehydrogenase complex deficiency; PKAN, Panthothenate kinase-associated degeneration; PLAN, PLA2G6-associated neurodegeneration; SSADH, succinic semialdehyde dehydrogenase deficiency.

Table 2

Selected MRI changes and clinical features that aid narrowing down diagnostic differentials for disorders with MRI basal ganglia changes

MRI/clinical featureDiagnostic differential
ACalcification accompanying
brain iron deposition
BPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy witd increased
basal ganglia susceptibility
Aceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
C

Cerebellar atrophy with

 

basal ganglia T2W hyperintensity

MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
AFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulphite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
F

Hypomyelination with increased

 

basal ganglia susceptibility

BPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
G

Hypomyelination with

 

basal ganglia T2W hyperintensity

3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various—particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
I

Mainly pallidal T2W hyperintensity

 

without striatal abnormalities

3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes—monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
J

Optic atrophy with increased

 

basal ganglia susceptibility

AP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
K

Optic atrophy with

 

basal ganglia T2W hyperintensity

Giant axonal neuropathy
Mitochondrial disorders—LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
P

Rim of T2W hyperintensity

 

around the putamen

ADEM
ANE
BGE
Encephalitis—Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
S

T1W hyperintensities

 

in the basal ganglia—Diffuse

Ephedrine toxicity
Hypermanganesemia—TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
T

T1W hyperintensities

 

in the basal ganglia—Patchy

Basal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy
MRI/clinical featureDiagnostic differential
ACalcification accompanying
brain iron deposition
BPAN
CoPAN
PKAN
SQSTM1
BCerebellar atrophy witd increased
basal ganglia susceptibility
Aceruloplasminemia
AFG3L2
Alpha mannosidosis
Aspartylglucosaminuria
BPAN
Choline transporter-like 1 deficiency (SLC44A1)
Congenital disorder of glycosylation, type IIn (SLC39A8)
Cockayne syndrome
FAHN
Fucosidosis
GM1 and GM2 Gangliosidoses
GTPBP2
Kufor Rakeb syndrome
Langerhans cell histiocytosis
C

Cerebellar atrophy with

 

basal ganglia T2W hyperintensity

MPAN
Mucolipidosis type IV
Neuroferritinopathy
PKAN
PLAN
REPS1
SQSTM1
TUBB4A
AFG3L2
Aspartylglucosaminuria
DNAJC19
GM1 and GM2 Gangliosidoses
L-2-OH-glutaric aciduria
MEGDEL
Mitochondrial disorders (various)
PDHC
Sequelae of infectious encephalitis
SSADH
UFM1
VPS13D
Wilson’s disease
DCorticospinal tract T2W hyperintensity3-HMG-CoA lyase deficiency
CP
Cerebrotendinous xanthomatosis
Krabbe disease
SLC19A3
VPS13D
EDentate T2W hyperintensities3-HMG-COA Lyase deficiency
ADEM
Alexander disease
Arboviral encephalitis
Beta ketothiolase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Giant axonal neuropathy
Glutaric aciduria type 1
Kearns Sayre syndrome
Kernicterus
Krabbe disease
L-2-OH-glutaric aciduria
Langerhans cell histiocytosis
Maple syrup urine disease
MEGDEL
MMA
Mitochondrial disorders (various)
Neuroferritinopathy
PDHC
Propionic acidaemia
SLC19A3
SSADH
Sulphite oxidase and molybdenum cofactor deficiency
Vigabatrin toxicity
Wilson's disease
F

Hypomyelination with increased

 

basal ganglia susceptibility

BPAN
ADAR
Alpha mannosidosis
Aspartylglucosaminuria
Cockayne syndrome
Fucosidosis
GM1 and GM2 Gangliosidoses
Idiopathic basal ganglia calcification
Mucolipidosis type IV
TUBB4A
G

Hypomyelination with

 

basal ganglia T2W hyperintensity

3-HMG-COA Lyase deficiency
Alexander disease
Canavan disease
Cerebral creatine deficiency syndromes
GM1 and GM2 Gangliosidoses
Glutaric aciduria type 1
Methylmalonic acidaemia
Mitochondrial disorders (various—particularly Complex 1 deficiency)
POLR3A
Propionic acidaemia
SSADH
UFM1
HHypothalamus T2W hyperintensityADEM
ANE
Kearns Sayre syndrome
Langerhans cell histiocytosis
LHON
ADEM (NMO spectrum disorder)
PDHC
Vigabatrin toxicity
Fucosidosis
Hypothalamus T1W hyperintensityManganese toxicity
Liver failure (likely due to secondary manganese accumulation)
I

Mainly pallidal T2W hyperintensity

 

without striatal abnormalities

3-HMG-COA Lyase deficiency
Canavan disease
Cerebrotendinous xanthomatosis
Carbon monoxide poisoning
Creatine deficiency syndromes—monogenic and secondary
Isovaleric acidaemia
Kearns Sayre syndrome
Kernicterus
Krabbe disease
MMA
PDHC
SSADH
Vigabatrin toxicity
J

Optic atrophy with increased

 

basal ganglia susceptibility

AP4 deficiency
FAHN
Kufor Rakeb syndrome
MPAN
PLAN
K

Optic atrophy with

 

basal ganglia T2W hyperintensity

Giant axonal neuropathy
Mitochondrial disorders—LHON and others
MECR
Methanol toxicity
NUP62
LOptic tract/chiasm thickeningADEM (NMO spectrum disorder)
Alexander disease
Krabbe disease
LHON
MPituitary signal change/atrophyLangerhans cell histiocytosis
SLC30A10
SLC39A14
Woodhouse Sakati syndrome
NShort stature/poor growth3-HMG-COA Lyase deficiency
AP4 deficiency
Choline transporter-like 1 deficiency (SLC44A1)
Cockayne syndrome
KMT2B
Mitochondrial disorders
ORetinopathy2-Methyl-3-Hydroxybutyryl-CoA Dehydrogenase Deficiency
Aceruloplasminemia
BPAN
Kearns Sayre syndrome
Methanol toxicity
Mitochondrial disorders (various)
Mucolipidosis type IV
PKAN
VAC14
P

Rim of T2W hyperintensity

 

around the putamen

ADEM
ANE
BGE
Encephalitis—Arboviruses
Gangliosidoses
Metabolic acidosis
Myelinolysis
Propionic acidaemia
SLC19A3
Uraemia
Wilson’s disease
QSensorineural hearing loss3-HMG-COA lyase deficiency
Alpha mannosidosis
Cockayne syndrome
Kernicterus
MEGDEL
Metachromatic leukodystrophy
SCP2
Mitochondrial disorders (various)
Woodhouse Sakati syndrome
RIncreased striatal susceptibilityAceruloplasminemia
Alpha mannosidosis
Aspartylglucosaminuria
Basal ganglia calcification
Kufor Rakeb syndrome
Multiple system atrophy
Mucolipidosis type IV
Neuroferritinopathy
SLC30A10
SQSTM1
Wilson’s disease
S

T1W hyperintensities

 

in the basal ganglia—Diffuse

Ephedrine toxicity
Hypermanganesemia—TPN, environmental
SLC30A10
SLC39A14
Wilson’s disease (particularly with porto-systemic shunt)
In association with increased basal ganglia susceptibility (less hyperintense than disorders with manganese accumulation)
T

T1W hyperintensities

 

in the basal ganglia—Patchy

Basal ganglia calcification
Carbon monoxide poisoning
Cyanide poisoning
PDE8B
Sequelae of inflammatory disorders
UT2W hypointensities in the thalamusAlpha mannosidosis
Aspartylglucosaminuria
Fucosidosis
Gangliosidoses
Metachromatic leukodystrophy

ADEM, acute-disseminated encephalomyelitis; ANE, acute necrotizing encephalopathy; BGE, autoimmune basal ganglia encephalitis; BPAN, beta-propeller protein-associated degeneration; CoPAN, COASY protein-associated neurodegeneration; CP, cerebral palsy (due to HIE in term babies); FAHN, FA2H-associated neurodegeneration; LHON, Leber’s hereditary optic neuropathy; MEGDEL, 3-methylglutaconic aciduria with sensori-neural deafness, encephalopathy, and Leigh-like syndrome; MMA, methyl malonic acidaemia; MPAN, mitochondrial membrane protein-associated neurodegeneration; NMO, neuromyelitis optica spectrum disorder; PDHC, pyruvate dehydrogenase complex deficiency; PKAN, Panthothenate kinase-associated degeneration; PLAN, PLA2G6-associated neurodegeneration; SSADH, succinic semialdehyde dehydrogenase deficiency.

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