1-20 of 23
Authors: Rob Patro
Journal Article
Collapsible tree: interactive web app to present collapsible hierarchies Get access
Bioinformatics, Volume 40, Issue 11, November 2024, btae645, https://doi.org/10.1093/bioinformatics/btae645
Published: 26 October 2024
Journal Article
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads
Bioinformatics, Volume 40, Issue Supplement_1, July 2024, Pages i297–i306, https://doi.org/10.1093/bioinformatics/btae207
Published: 28 June 2024
Journal Article
Designing efficient randstrobes for sequence similarity analyses
Bioinformatics, Volume 40, Issue 4, April 2024, btae187, https://doi.org/10.1093/bioinformatics/btae187
Published: 05 April 2024
Journal Article
simpleaf: a simple, flexible, and scalable framework for single-cell data processing using alevin-fry
Bioinformatics, Volume 39, Issue 10, October 2023, btad614, https://doi.org/10.1093/bioinformatics/btad614
Published: 06 October 2023
Journal Article
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets
Bioinformatics, Volume 38, Issue 10, May 2022, Pages 2773–2780, https://doi.org/10.1093/bioinformatics/btac212
Published: 06 April 2022
Journal Article
An incrementally updatable and scalable system for large-scale sequence search using the Bentley–Saxe transformation
Bioinformatics, Volume 38, Issue 12, June 2022, Pages 3155–3163, https://doi.org/10.1093/bioinformatics/btac142
Published: 23 March 2022
Journal Article
Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i177–i186, https://doi.org/10.1093/bioinformatics/btab309
Published: 12 July 2021
Journal Article
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
Bioinformatics, Volume 37, Issue 22, November 2021, Pages 4048–4055, https://doi.org/10.1093/bioinformatics/btab408
Published: 12 June 2021
Journal Article
Compression of quantification uncertainty for scRNA-seq counts
Bioinformatics, Volume 37, Issue 12, June 2021, Pages 1699–1707, https://doi.org/10.1093/bioinformatics/btab001
Published: 20 January 2021
Journal Article
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data
Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i102–i110, https://doi.org/10.1093/bioinformatics/btaa448
Published: 13 July 2020
Journal Article
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification
Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i292–i299, https://doi.org/10.1093/bioinformatics/btaa450
Published: 13 July 2020
Journal Article
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i136–i144, https://doi.org/10.1093/bioinformatics/btz351
Published: 05 July 2019
Journal Article
A space and time-efficient index for the compacted colored de Bruijn graph
Bioinformatics, Volume 34, Issue 13, July 2018, Pages i169–i177, https://doi.org/10.1093/bioinformatics/bty292
Published: 27 June 2018
Journal Article
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis
Bioinformatics, Volume 34, Issue 19, October 2018, Pages 3265–3272, https://doi.org/10.1093/bioinformatics/bty378
Published: 08 May 2018
Journal Article
Squeakr: an exact and approximate k-mer counting system
Bioinformatics, Volume 34, Issue 4, February 2018, Pages 568–575, https://doi.org/10.1093/bioinformatics/btx636
Published: 09 October 2017
Journal Article
Improved data-driven likelihood factorizations for transcript abundance estimation
Bioinformatics, Volume 33, Issue 14, July 2017, Pages i142–i151, https://doi.org/10.1093/bioinformatics/btx262
Published: 12 July 2017
Journal Article
deBGR: an efficient and near-exact representation of the weighted de Bruijn graph
Bioinformatics, Volume 33, Issue 14, July 2017, Pages i133–i141, https://doi.org/10.1093/bioinformatics/btx261
Published: 12 July 2017
Journal Article
Quark enables semi-reference-based compression of RNA-seq data
Bioinformatics, Volume 33, Issue 21, November 012017, Pages 3380–3386, https://doi.org/10.1093/bioinformatics/btx428
Published: 03 July 2017
Journal Article
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes
Bioinformatics, Volume 32, Issue 12, June 2016, Pages i192–i200, https://doi.org/10.1093/bioinformatics/btw277
Published: 11 June 2016
Journal Article
Data-dependent bucketing improves reference-free compression of sequencing reads
Bioinformatics, Volume 31, Issue 17, September 2015, Pages 2770–2777, https://doi.org/10.1093/bioinformatics/btv248
Published: 24 April 2015
