Volume 19, Issue 17, November 2003
DISCOVERY NOTES
Silent DNA: speaking RNA language?
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2167–2170, https://doi.org/10.1093/bioinformatics/btg320
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2171–2175, https://doi.org/10.1093/bioinformatics/btg370
REVIEWS
Early bioinformatics: the birth of a discipline—a personal view
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2176–2190, https://doi.org/10.1093/bioinformatics/btg309
ORIGINAL PAPERS
Automatic design of gene-specific sequence tags for genome-wide functional studies
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2191–2198, https://doi.org/10.1093/bioinformatics/btg286
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2199–2209, https://doi.org/10.1093/bioinformatics/btg297
MGraph: graphical models for microarray data analysis
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2210–2211, https://doi.org/10.1093/bioinformatics/btg298
Linking the growth inhibition response from the National Cancer Institute's anticancer screen to gene expression levels and other molecular target data
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2212–2224, https://doi.org/10.1093/bioinformatics/btg302
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2225–2236, https://doi.org/10.1093/bioinformatics/btg303
Parametric alignment of ordered trees
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2237–2245, https://doi.org/10.1093/bioinformatics/btg305
A simple and efficient algorithm for gene selection using sparse logistic regression
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2246–2253, https://doi.org/10.1093/bioinformatics/btg308
Normality of oligonucleotide microarray data and implications for parametric statistical analyses
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2254–2262, https://doi.org/10.1093/bioinformatics/btg311
Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2263–2270, https://doi.org/10.1093/bioinformatics/btg312
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2271–2282, https://doi.org/10.1093/bioinformatics/btg313
Metabolomics spectral formatting, alignment and conversion tools (MSFACTs)
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2283–2293, https://doi.org/10.1093/bioinformatics/btg315
Efficient remote homology detection using local structure
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2294–2301, https://doi.org/10.1093/bioinformatics/btg317
Missing-value estimation using linear and non-linear regression with Bayesian gene selection
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2302–2307, https://doi.org/10.1093/bioinformatics/btg323
APPLICATIONS NOTES
PDB file parser and structure class implemented in Python
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2308–2310, https://doi.org/10.1093/bioinformatics/btg299
TSGDB: a database system for tumor suppressor genes
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2311–2312, https://doi.org/10.1093/bioinformatics/btg300
MASV—Multiple (BLAST) Annotation System Viewer
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2313–2315, https://doi.org/10.1093/bioinformatics/btg301
GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2316–2318, https://doi.org/10.1093/bioinformatics/btg304
BioWareDB: the biomedical software and database search engine
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2319–2320, https://doi.org/10.1093/bioinformatics/btg306
Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2321–2322, https://doi.org/10.1093/bioinformatics/btg307
BLAST++: BLASTing queries in batches
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2323–2324, https://doi.org/10.1093/bioinformatics/btg310
libsequence: a C++ class library for evolutionary genetic analysis
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2325–2327, https://doi.org/10.1093/bioinformatics/btg316
PreP: gene expression data pre-processing
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2328–2329, https://doi.org/10.1093/bioinformatics/btg318
NCL: a C++ class library for interpreting data files in NEXUS format
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2330–2331, https://doi.org/10.1093/bioinformatics/btg319
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data
Bioinformatics, Volume 19, Issue 17, November 2003, Pages 2332–2333, https://doi.org/10.1093/bioinformatics/btg321
