Volume 19, Issue 18, December 2003
ORIGINAL PAPERS
Combining DNA expression with positional information to detect functional silencing of chromosomal regions
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2335–2342, https://doi.org/10.1093/bioinformatics/btg314
Annotation pattern of ESTs from Spodoptera frugiperda Sf9 cells and analysis of the ribosomal protein genes reveal insect-specific features and unexpectedly low codon usage bias
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2343–2350, https://doi.org/10.1093/bioinformatics/btg324
JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2351–2358, https://doi.org/10.1093/bioinformatics/btg327
Efficient estimation of emission probabilities in profile hidden Markov models
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2359–2368, https://doi.org/10.1093/bioinformatics/btg328
Combining phylogenetic data with co-regulated genes to identify regulatory motifs
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2369–2380, https://doi.org/10.1093/bioinformatics/btg329
Scoring clustering solutions by their biological relevance
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2381–2389, https://doi.org/10.1093/bioinformatics/btg330
Classification of protein quaternary structure with support vector machine
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2390–2396, https://doi.org/10.1093/bioinformatics/btg331
Algorithms for large-scale genotyping microarrays
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2397–2403, https://doi.org/10.1093/bioinformatics/btg332
caCORE: A common infrastructure for cancer informatics
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2404–2412, https://doi.org/10.1093/bioinformatics/btg335
Global snapshot of a protein interaction network—a percolation based approach
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2413–2419, https://doi.org/10.1093/bioinformatics/btg339
SEMEDA: ontology based semantic integration of biological databases
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2420–2427, https://doi.org/10.1093/bioinformatics/btg340
Susceptibility of non-linear systems as an approach to metabolic responses
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2428–2435, https://doi.org/10.1093/bioinformatics/btg341
Metabolic pathways in three dimensions
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2436–2441, https://doi.org/10.1093/bioinformatics/btg342
Accelerating screening of 3D protein data with a graph theoretical approach
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2442–2447, https://doi.org/10.1093/bioinformatics/btg343
A random variance model for detection of differential gene expression in small microarray experiments
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2448–2455, https://doi.org/10.1093/bioinformatics/btg345
Assessing sequence comparison methods with the average precision criterion
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2456–2460, https://doi.org/10.1093/bioinformatics/btg349
Using credibility intervals instead of hypothesis tests in SAGE analysis
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2461–2464, https://doi.org/10.1093/bioinformatics/btg357
A CART-based approach to discover emerging patterns in microarray data
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2465–2472, https://doi.org/10.1093/bioinformatics/btg361
APPLICATIONS NOTES
The MUSC DNA Microarray Database
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2473–2474, https://doi.org/10.1093/bioinformatics/btg325
MREPATT: detection and analysis of exact consecutive repeats in genomic sequences
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2475–2476, https://doi.org/10.1093/bioinformatics/btg326
gff2aplot: Plotting sequence comparisons
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2477–2479, https://doi.org/10.1093/bioinformatics/btg334
MUTAGEN: Multi-User Tool for Annotating GENomes
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2480–2481, https://doi.org/10.1093/bioinformatics/btg336
LOX-DB—a database on lipoxygenases
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2482–2483, https://doi.org/10.1093/bioinformatics/btg337
GoFigure: Automated Gene Ontology™ annotation
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2484–2485, https://doi.org/10.1093/bioinformatics/btg338
PRIMEX: rapid identification of oligonucleotide matches in whole genomes
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2486–2488, https://doi.org/10.1093/bioinformatics/btg350
KISS for STRAP: user extensions for a protein alignment editor
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2489–2491, https://doi.org/10.1093/bioinformatics/btg354
SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2492–2493, https://doi.org/10.1093/bioinformatics/btg355
Machaon CVE: cluster validation for gene expression data
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2494–2495, https://doi.org/10.1093/bioinformatics/btg356
DnaSP, DNA polymorphism analyses by the coalescent and other methods
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2496–2497, https://doi.org/10.1093/bioinformatics/btg359
SPEPlip: the detection of signal peptide and lipoprotein cleavage sites
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2498–2499, https://doi.org/10.1093/bioinformatics/btg360
ModLoop: automated modeling of loops in protein structures
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2500–2501, https://doi.org/10.1093/bioinformatics/btg362
Characterizing gene sets with FuncAssociate
Bioinformatics, Volume 19, Issue 18, December 2003, Pages 2502–2504, https://doi.org/10.1093/bioinformatics/btg363
