Volume 10, Issue 1, 2024
Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana
Wonderful T Choga and others
Virus Evolution, Volume 10, Issue 1, 2024, veae095, https://doi.org/10.1093/ve/veae095
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics
Adriana Lucia-Sanz and others
Virus Evolution, Volume 10, Issue 1, 2024, veae104, https://doi.org/10.1093/ve/veae104
Research Article
Synergetic association between coxsackievirus A16 genotype evolution and recombinant form shifts
Zhenzhi Han and others
Virus Evolution, Volume 10, Issue 1, 2024, vead080, https://doi.org/10.1093/ve/vead080
Tracing the adaptive evolution of SARS-CoV-2 during vaccine roll-out in Norway
Ignacio Garcia and others
Virus Evolution, Volume 10, Issue 1, 2024, vead081, https://doi.org/10.1093/ve/vead081
Computational multigene interactions in virus growth and infection spread
Bradley Schwab and John Yin
Virus Evolution, Volume 10, Issue 1, 2024, vead082, https://doi.org/10.1093/ve/vead082
Computational host range prediction—The good, the bad, and the ugly
Abigail A Howell and others
Virus Evolution, Volume 10, Issue 1, 2024, vead083, https://doi.org/10.1093/ve/vead083
Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with normal and delayed viral clearance
Vasanthi Avadhanula and others
Virus Evolution, Volume 10, Issue 1, 2024, vead086, https://doi.org/10.1093/ve/vead086
The coevolutionary mosaic of bat betacoronavirus emergence risk
Norma R Forero-Muñoz and others
Virus Evolution, Volume 10, Issue 1, 2024, vead079, https://doi.org/10.1093/ve/vead079
SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations
Gila Lustig and others
Virus Evolution, Volume 10, Issue 1, 2024, vead075, https://doi.org/10.1093/ve/vead075
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method
Adriano de Bernardi Schneider and others
Virus Evolution, Volume 10, Issue 1, 2024, vead085, https://doi.org/10.1093/ve/vead085
New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes
Marco Forgia and others
Virus Evolution, Volume 10, Issue 1, 2024, veae003, https://doi.org/10.1093/ve/veae003
Conserved untranslated regions of multipartite viruses: Natural markers of novel viral genomic components and tags of viral evolution
Song Zhang and others
Virus Evolution, Volume 10, Issue 1, 2024, veae004, https://doi.org/10.1093/ve/veae004
Contemporary and historical human migration patterns shape hepatitis B virus diversity
Barney I Potter and others
Virus Evolution, Volume 10, Issue 1, 2024, veae009, https://doi.org/10.1093/ve/veae009
A new genus of alphasatellites associated with banana bunchy top virus in Southeast Asia
Valentin Guyot and others
Virus Evolution, Volume 10, Issue 1, 2024, vead076, https://doi.org/10.1093/ve/vead076
Genomic and phylogenetic features of the Picobirnaviridae suggest microbial rather than animal hosts
Sabrina Sadiq and others
Virus Evolution, Volume 10, Issue 1, 2024, veae033, https://doi.org/10.1093/ve/veae033
Highly pathogenic avian influenza H5N1 virus infections in pinnipeds and seabirds in Uruguay: Implications for bird–mammal transmission in South America
Gonzalo Tomás and others
Virus Evolution, Volume 10, Issue 1, 2024, veae031, https://doi.org/10.1093/ve/veae031
A novel and diverse family of filamentous DNA viruses associated with parasitic wasps
Benjamin Guinet and others
Virus Evolution, Volume 10, Issue 1, 2024, veae022, https://doi.org/10.1093/ve/veae022
Lytic/Lysogenic Transition as a Life-History Switch
Joan Roughgarden
Virus Evolution, Volume 10, Issue 1, 2024, veae028, https://doi.org/10.1093/ve/veae028
High pathogenic avian influenza A(H5) viruses of clade 2.3.4.4b in Europe—Why trends of virus evolution are more difficult to predict
Alice Fusaro and others
Virus Evolution, Volume 10, Issue 1, 2024, veae027, https://doi.org/10.1093/ve/veae027
Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations—Application to HIV-1 quasispecies
Dylan H Westfall and others
Virus Evolution, Volume 10, Issue 1, 2024, veae019, https://doi.org/10.1093/ve/veae019
Evolution of exploitation and replication of giant viruses and virophages
Ana del Arco and others
Virus Evolution, Volume 10, Issue 1, 2024, veae021, https://doi.org/10.1093/ve/veae021
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha
Áine O’Toole and others
Virus Evolution, Volume 10, Issue 1, 2024, veae023, https://doi.org/10.1093/ve/veae023
VIPERA: Viral Intra-Patient Evolution Reporting and Analysis
Miguel Álvarez-Herrera and others
Virus Evolution, Volume 10, Issue 1, 2024, veae018, https://doi.org/10.1093/ve/veae018
Comparative evolutionary analyses of peste des petits ruminants virus genetic lineages
Maxime Courcelle and others
Virus Evolution, Volume 10, Issue 1, 2024, veae012, https://doi.org/10.1093/ve/veae012
Virome release of an invasive exotic plant species in southern France
Oumaima Moubset and others
Virus Evolution, Volume 10, Issue 1, 2024, veae025, https://doi.org/10.1093/ve/veae025
Evolutionary trajectory of diverse SARS-CoV-2 variants at the beginning of COVID-19 outbreak
Jia-Xin Lv and others
Virus Evolution, Volume 10, Issue 1, 2024, veae020, https://doi.org/10.1093/ve/veae020
Diverse RNA viruses in the venom-related microenvironment of different animal phyla
Jingkai Ji and others
Virus Evolution, Volume 10, Issue 1, 2024, veae024, https://doi.org/10.1093/ve/veae024
Swine influenza A virus infection dynamics and evolution in intensive pig production systems
Paula Lagan and others
Virus Evolution, Volume 10, Issue 1, 2024, veae017, https://doi.org/10.1093/ve/veae017
Within-host evolution of SARS-CoV-2: how often are de novo mutations transmitted from symptomatic infections?
Chapin S Korosec and others
Virus Evolution, Volume 10, Issue 1, 2024, veae006, https://doi.org/10.1093/ve/veae006
High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA
William M Switzer and others
Virus Evolution, Volume 10, Issue 1, 2024, veae015, https://doi.org/10.1093/ve/veae015
Genetic insights of H9N2 avian influenza viruses circulating in Mali and phylogeographic patterns in Northern and Western Africa
Idrissa Nonmon Sanogo and others
Virus Evolution, Volume 10, Issue 1, 2024, veae011, https://doi.org/10.1093/ve/veae011
Genomic epidemiology of highly pathogenic avian influenza A (H5N1) virus in wild birds in South Korea during 2021–2022: Changes in viral epidemic patterns
Ji-Yun Kim and others
Virus Evolution, Volume 10, Issue 1, 2024, veae014, https://doi.org/10.1093/ve/veae014
Genomic surveillance and evolutionary dynamics of type 2 porcine reproductive and respiratory syndrome virus in China spanning the African swine fever outbreak
Zhiyong Wu and others
Virus Evolution, Volume 10, Issue 1, 2024, veae016, https://doi.org/10.1093/ve/veae016
Virome analysis of New Zealand’s bats reveals cross-species viral transmission among the Coronaviridae
Stephanie J Waller and others
Virus Evolution, Volume 10, Issue 1, 2024, veae008, https://doi.org/10.1093/ve/veae008
Equine herpesvirus 4 infected domestic horses associated with Sintashta spoke-wheeled chariots around 4,000 years ago
Ophélie Lebrasseur and others
Virus Evolution, Volume 10, Issue 1, 2024, vead087, https://doi.org/10.1093/ve/vead087
Human immunodeficiency virus dynamics in secondary lymphoid tissues and the evolution of cytotoxic T lymphocyte escape mutants
Wen-Jian Chung and others
Virus Evolution, Volume 10, Issue 1, 2024, vead084, https://doi.org/10.1093/ve/vead084
Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage
Anton Labutin and Gerald Heckel
Virus Evolution, Volume 10, Issue 1, 2024, veae002, https://doi.org/10.1093/ve/veae002
Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection
Christopher J. R Illingworth and others
Virus Evolution, Volume 10, Issue 1, 2024, veae001, https://doi.org/10.1093/ve/veae001
A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data
Nadja Brait and others
Virus Evolution, Volume 10, Issue 1, 2024, vead088, https://doi.org/10.1093/ve/vead088
Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae)
Danyil Grybchuk and others
Virus Evolution, Volume 10, Issue 1, 2024, veae037, https://doi.org/10.1093/ve/veae037
Emergence and dissemination of SARS-CoV-2 XBB.1.5 in New York
Fabiana Gámbaro and others
Virus Evolution, Volume 10, Issue 1, 2024, veae035, https://doi.org/10.1093/ve/veae035
Cell type-specific adaptation of the SARS-CoV-2 spike
Marc Carrascosa-Sàez and others
Virus Evolution, Volume 10, Issue 1, 2024, veae032, https://doi.org/10.1093/ve/veae032
Changing selection on amino acid substitutions in Gag protein between major HIV-1 subtypes
Galya V Klink and others
Virus Evolution, Volume 10, Issue 1, 2024, veae036, https://doi.org/10.1093/ve/veae036
Long-term evolution of human seasonal influenza virus A(H3N2) is associated with an increase in polymerase complex activity
René M Vigeveno and others
Virus Evolution, Volume 10, Issue 1, 2024, veae030, https://doi.org/10.1093/ve/veae030
Widespread occurrence and diverse origins of polintoviruses influence lineage-specific genome dynamics in stony corals
Danae Stephens and others
Virus Evolution, Volume 10, Issue 1, 2024, veae039, https://doi.org/10.1093/ve/veae039
A parasite odyssey: An RNA virus concealed in Toxoplasma gondii
Purav Gupta and others
Virus Evolution, Volume 10, Issue 1, 2024, veae040, https://doi.org/10.1093/ve/veae040
Selection of viral variants with enhanced transmission and reduced neutralization susceptibility alongside lateral introductions may explain the persistence of porcine reproductive and respiratory syndrome virus in vaccinated breeding herds
Hepzibar Clilverd and others
Virus Evolution, Volume 10, Issue 1, 2024, veae041, https://doi.org/10.1093/ve/veae041
Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks
Michael A Martin and others
Virus Evolution, Volume 10, Issue 1, 2024, veae042, https://doi.org/10.1093/ve/veae042
Comparative genome analysis reveals driving forces behind Monkeypox virus evolution and sheds light on the role of ATC trinucleotide motif
Preeti Agarwal and others
Virus Evolution, Volume 10, Issue 1, 2024, veae043, https://doi.org/10.1093/ve/veae043
The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat
Jackie E Mahar and others
Virus Evolution, Volume 10, Issue 1, 2024, veae044, https://doi.org/10.1093/ve/veae044
Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status
Ashley Sobel Leonard and others
Virus Evolution, Volume 10, Issue 1, 2024, veae034, https://doi.org/10.1093/ve/veae034
Natural variation in neuraminidase activity influences the evolutionary potential of the seasonal H1N1 lineage hemagglutinin
Tongyu Liu and others
Virus Evolution, Volume 10, Issue 1, 2024, veae046, https://doi.org/10.1093/ve/veae046
Evolution of DS-1-like G8P[8] rotavirus A strains from Vietnamese children with acute gastroenteritis (2014–21): Adaptation and loss of animal rotavirus-derived genes during human-to-human spread
Thi Nguyen Hoa-Tran and others
Virus Evolution, Volume 10, Issue 1, 2024, veae045, https://doi.org/10.1093/ve/veae045
Comparative analysis of multiple consensus genomes of the same strain of Marek’s disease virus reveals intrastrain variation
Alejandro Ortigas-Vasquez and others
Virus Evolution, Volume 10, Issue 1, 2024, veae047, https://doi.org/10.1093/ve/veae047
Bacteriophage Φ21’s receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity
Krista R Gerbino and others
Virus Evolution, Volume 10, Issue 1, 2024, veae049, https://doi.org/10.1093/ve/veae049
Viromes of Antarctic fish resemble the diversity found at lower latitudes
Rebecca M Grimwood and others
Virus Evolution, Volume 10, Issue 1, 2024, veae050, https://doi.org/10.1093/ve/veae050
Adaptation of turnip mosaic virus to Arabidopsis thaliana involves rewiring of VPg–host proteome interactions
José L Carrasco and others
Virus Evolution, Volume 10, Issue 1, 2024, veae055, https://doi.org/10.1093/ve/veae055
Genomic analysis of hyperparasitic viruses associated with entomopoxviruses
Zachary K Barth and others
Virus Evolution, Volume 10, Issue 1, 2024, veae051, https://doi.org/10.1093/ve/veae051
A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development
Foo Hou Tan and others
Virus Evolution, Volume 10, Issue 1, 2024, veae048, https://doi.org/10.1093/ve/veae048
Origins, diversity, and adaptive evolution of DWV in the honey bees of the Azores: the impact of the invasive mite Varroa destructor
Ana R Lopes and others
Virus Evolution, Volume 10, Issue 1, 2024, veae053, https://doi.org/10.1093/ve/veae053
Deciphering the evolutionary landscape of severe fever with thrombocytopenia syndrome virus across East Asia
Dongbin Park and others
Virus Evolution, Volume 10, Issue 1, 2024, veae054, https://doi.org/10.1093/ve/veae054
Using structure prediction of negative sense RNA virus nucleoproteins to assess evolutionary relationships
Kimberly R Sabsay and Aartjan J W te Velthuis
Virus Evolution, Volume 10, Issue 1, 2024, veae058, https://doi.org/10.1093/ve/veae058
Analysis of the genetic diversity in RNA-directed RNA polymerase sequences: implications for an automated RNA virus classification system
Zhongshuai Tian and others
Virus Evolution, Volume 10, Issue 1, 2024, veae059, https://doi.org/10.1093/ve/veae059
Investigating the emergence of a zoonotic virus: phylogenetic analysis of European bat lyssavirus 1 in the UK
Megan E Golding and others
Virus Evolution, Volume 10, Issue 1, 2024, veae060, https://doi.org/10.1093/ve/veae060
GALV-KoRV-related retroviruses in diverse Australian and African rodent species
Joshua A Hayward and others
Virus Evolution, Volume 10, Issue 1, 2024, veae061, https://doi.org/10.1093/ve/veae061
The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses
Chenxi Li and others
Virus Evolution, Volume 10, Issue 1, 2024, veae062, https://doi.org/10.1093/ve/veae062
Opening a 60-year time capsule: sequences of historical poliovirus cold variants shed a new light on a contemporary strain
Morgane Chesnais and others
Virus Evolution, Volume 10, Issue 1, 2024, veae063, https://doi.org/10.1093/ve/veae063
Deep mutational scanning of SARS-CoV-2 Omicron BA.2.86 and epistatic emergence of the KP.3 variant
Ashley L Taylor and Tyler N Starr
Virus Evolution, Volume 10, Issue 1, 2024, veae067, https://doi.org/10.1093/ve/veae067
The classification, origin, and evolutionary dynamics of severe fever with thrombocytopenia syndrome virus circulating in East Asia
Shaowei Sang and others
Virus Evolution, Volume 10, Issue 1, 2024, veae072, https://doi.org/10.1093/ve/veae072
Evolution of the Cytomegalovirus RL11 gene family in Old World monkeys and Great Apes
Ulad Litvin and others
Virus Evolution, Volume 10, Issue 1, 2024, veae066, https://doi.org/10.1093/ve/veae066
Cryptic transmission and novel introduction of Dengue 1 and 2 genotypes in Colombia
David Martínez and others
Virus Evolution, Volume 10, Issue 1, 2024, veae068, https://doi.org/10.1093/ve/veae068
SARS-CoV-2 variant replacement constrains vaccine-specific viral diversification
Bethany L Dearlove and others
Virus Evolution, Volume 10, Issue 1, 2024, veae071, https://doi.org/10.1093/ve/veae071
Phylogenetic evidence of extensive spatial mixing of diverse HIV-1 group M lineages within Cameroon but not between its neighbours
Célestin Godwe and others
Virus Evolution, Volume 10, Issue 1, 2024, veae070, https://doi.org/10.1093/ve/veae070
Historical drivers of HCV Subtypes 1b and 3a in Thailand and 6f in Phetchabun, an HCV endemic area of the country
Rujipat Wasitthankasem and others
Virus Evolution, Volume 10, Issue 1, 2024, veae079, https://doi.org/10.1093/ve/veae079
Innovation in viruses: fitness valley crossing, neutral landscapes, or just duplications?
Paul Banse and others
Virus Evolution, Volume 10, Issue 1, 2024, veae078, https://doi.org/10.1093/ve/veae078
Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study
Seungwon Kim and others
Virus Evolution, Volume 10, Issue 1, 2024, veae065, https://doi.org/10.1093/ve/veae065
Intrahost evolution leading to distinct lineages in the upper and lower respiratory tracts during SARS-CoV-2 prolonged infection
Majdouline El Moussaoui and others
Virus Evolution, Volume 10, Issue 1, 2024, veae073, https://doi.org/10.1093/ve/veae073
Comprehensive detection and dissection of interlineage recombination events in the SARS-CoV-2 pandemic
Jia-Ying Li and others
Virus Evolution, Volume 10, Issue 1, 2024, veae074, https://doi.org/10.1093/ve/veae074
Independent repeated mutations within the alphaviruses Ross River virus and Barmah Forest virus indicates convergent evolution and past positive selection in ancestral populations despite ongoing purifying selection
Alyssa T Pyke and others
Virus Evolution, Volume 10, Issue 1, 2024, veae080, https://doi.org/10.1093/ve/veae080
Structural models predict a significantly higher binding affinity between the NblA protein of cyanophage Ma-LMM01 and the phycocyanin of Microcystis aeruginosa NIES-298 compared to the host homolog
Isaac Meza-Padilla and others
Virus Evolution, Volume 10, Issue 1, 2024, veae082, https://doi.org/10.1093/ve/veae082
Contrasting dynamics of two incursions of low-pathogenicity avian influenza virus into Australia
Michelle Wille and others
Virus Evolution, Volume 10, Issue 1, 2024, veae076, https://doi.org/10.1093/ve/veae076
Evolutionary characterization of the establishment of H6 influenza viruses in domestic geese in China: implications for the position of the host in the ecosystem
Liuxia Peng and others
Virus Evolution, Volume 10, Issue 1, 2024, veae075, https://doi.org/10.1093/ve/veae075
Influenza A virus within-host evolution and positive selection in a densely sampled household cohort over three seasons
Emily E Bendall and others
Virus Evolution, Volume 10, Issue 1, 2024, veae084, https://doi.org/10.1093/ve/veae084
Genomic epidemiology reveals the variation and transmission properties of SARS-CoV-2 in a single-source community outbreak
Ning Zhao and others
Virus Evolution, Volume 10, Issue 1, 2024, veae085, https://doi.org/10.1093/ve/veae085
Long-read transcriptomics of Ostreid herpesvirus 1 uncovers a conserved expression strategy for the capsid maturation module and pinpoints a mechanism for evasion of the ADAR-based antiviral defence
Umberto Rosani and others
Virus Evolution, Volume 10, Issue 1, 2024, veae088, https://doi.org/10.1093/ve/veae088
Evolution of virulence in emerging epidemics: from theory to experimental evolution and back
Wakinyan Benhamou and others
Virus Evolution, Volume 10, Issue 1, 2024, veae069, https://doi.org/10.1093/ve/veae069
Enhanced detection and molecular modeling of adaptive mutations in SARS-CoV-2 coding and non-coding regions using the c/µ test
Nicholas J Paradis and Chun Wu
Virus Evolution, Volume 10, Issue 1, 2024, veae089, https://doi.org/10.1093/ve/veae089
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
Sravani Nanduri and others
Virus Evolution, Volume 10, Issue 1, 2024, veae087, https://doi.org/10.1093/ve/veae087
Community-level variability in Bronx COVID-19 hospitalizations associated with differing population immunity during the second year of the pandemic
Ryan Forster and others
Virus Evolution, Volume 10, Issue 1, 2024, veae090, https://doi.org/10.1093/ve/veae090
A virus associated with the zoonotic pathogen Plasmodium knowlesi causing human malaria is a member of a diverse and unclassified viral taxon
Mary E Petrone and others
Virus Evolution, Volume 10, Issue 1, 2024, veae091, https://doi.org/10.1093/ve/veae091
A phylogenetic assessment of HIV-1 transmission trends among people who inject drugs from Coastal and Nairobi, Kenya
Hanley Kingston and others
Virus Evolution, Volume 10, Issue 1, 2024, veae092, https://doi.org/10.1093/ve/veae092
CovTransformer: A transformer model for SARS-CoV-2 lineage frequency forecasting
Yinan Feng and others
Virus Evolution, Volume 10, Issue 1, 2024, veae086, https://doi.org/10.1093/ve/veae086
Evolution of a novel engineered tripartite viral genome of a torradovirus
Massimo Turina and others
Virus Evolution, Volume 10, Issue 1, 2024, Page 0, https://doi.org/10.1093/ve/veae098
Long-term co-circulation of multiple arboviruses in southeast Australia revealed by xeno-monitoring and viral whole-genome sequencing
Carla Julia S. P Vieira and others
Virus Evolution, Volume 10, Issue 1, 2024, Page 0, https://doi.org/10.1093/ve/veae103
Identification of a novel mycovirus belonging to the “flexivirus”-related family with icosahedral virion
Chien-Fu Wu and others
Virus Evolution, Volume 10, Issue 1, 2024, veae093, https://doi.org/10.1093/ve/veae093
Unraveling the genomic landscape of piscine myocarditis virus: mutation frequencies, viral diversity and evolutionary dynamics in Atlantic salmon
Racheal Amono and others
Virus Evolution, Volume 10, Issue 1, 2024, veae097, https://doi.org/10.1093/ve/veae097
Mathematical comparison of protocols for adapting a bacteriophage to a new host
James J Bull and Stephen M Krone
Virus Evolution, Volume 10, Issue 1, 2024, veae100, https://doi.org/10.1093/ve/veae100
Combined use of pritelivir with acyclovir or foscarnet suppresses evolution of HSV-1 drug resistance
Hanna Helena Schalkwijk and others
Virus Evolution, Volume 10, Issue 1, 2024, veae101, https://doi.org/10.1093/ve/veae101
A meta-analysis highlights the idiosyncratic nature of tradeoffs in laboratory models of virus evolution
Ketty Kabengele and others
Virus Evolution, Volume 10, Issue 1, 2024, veae105, https://doi.org/10.1093/ve/veae105
Increase of niche filling with increase of host richness for plant-infecting mastreviruses
Sélim Ben Chéhida and others
Virus Evolution, Volume 10, Issue 1, 2024, veae107, https://doi.org/10.1093/ve/veae107
Recurring incursions and dissemination of novel Eurasian-origin H5Nx avian influenza viruses in Atlantic Canada
Ishraq Rahman and others
Virus Evolution, Volume 10, Issue 1, 2024, veae111, https://doi.org/10.1093/ve/veae111
Origin, spread, and interspecies transmission of a dominant genotype of BJ/94 lineage H9N2 avian influenza viruses with increased threat
Yong Zhou and others
Virus Evolution, Volume 10, Issue 1, 2024, veae106, https://doi.org/10.1093/ve/veae106
Kuafuorterviruses, a novel major lineage of reverse-transcribing viruses
Zhen Gong and Guan-Zhu Han
Virus Evolution, Volume 10, Issue 1, 2024, veae110, https://doi.org/10.1093/ve/veae110
Resources
EvoLaps 2: Advanced phylogeographic visualization
F Chevenet and others
Virus Evolution, Volume 10, Issue 1, 2024, vead078, https://doi.org/10.1093/ve/vead078
Bases-dependent Rapid Phylogenetic Clustering (Bd-RPC) enables precise and efficient phylogenetic estimation in viruses
Bin Ma and others
Virus Evolution, Volume 10, Issue 1, 2024, veae005, https://doi.org/10.1093/ve/veae005
Improved detection of low-frequency within-host variants from deep sequencing: A case study with human papillomavirus
Sambit K Mishra and others
Virus Evolution, Volume 10, Issue 1, 2024, veae013, https://doi.org/10.1093/ve/veae013
F1ALA: ultrafast and memory-efficient ancestral lineage annotation applied to the huge SARS-CoV-2 phylogeny
Yongtao Ye and others
Virus Evolution, Volume 10, Issue 1, 2024, veae056, https://doi.org/10.1093/ve/veae056
Reflections
The untapped potential of phage model systems as therapeutic agents
Jordan Romeyer Dherbey and Frederic Bertels
Virus Evolution, Volume 10, Issue 1, 2024, veae007, https://doi.org/10.1093/ve/veae007
Importance of quantifying the number of viral reads in metagenomic sequencing of environmental samples from the Huanan Seafood Market
Jesse D Bloom
Virus Evolution, Volume 10, Issue 1, 2024, vead089, https://doi.org/10.1093/ve/vead089
What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market
Florence Débarre
Virus Evolution, Volume 10, Issue 1, 2024, vead077, https://doi.org/10.1093/ve/vead077
Prospects for a sequence-based taxonomy of influenza A virus subtypes
Art F. Y Poon
Virus Evolution, Volume 10, Issue 1, 2024, veae064, https://doi.org/10.1093/ve/veae064
A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK
Rachel Colquhoun and others
Virus Evolution, Volume 10, Issue 1, 2024, veae083, https://doi.org/10.1093/ve/veae083
On the importance of assessing topological convergence in Bayesian phylogenetic inference
Marius Brusselmans and others
Virus Evolution, Volume 10, Issue 1, 2024, veae081, https://doi.org/10.1093/ve/veae081
Endogenous viral elements: insights into data availability and accessibility
Muriel Ritsch and others
Virus Evolution, Volume 10, Issue 1, 2024, veae099, https://doi.org/10.1093/ve/veae099
A critique of the use of species and below-species taxonomic terms for viruses—time for change?
Peter Simmonds
Virus Evolution, Volume 10, Issue 1, 2024, veae096, https://doi.org/10.1093/ve/veae096
On modes of disease transmission and the hidden shape of pandemics: A review of Asymptomatic by Joshua Weitz
C. Brandon Ogbunugafor
Virus Evolution, Volume 10, Issue 1, 2024, veae109, https://doi.org/10.1093/ve/veae109
Review Article
Reassortments in single-stranded DNA multipartite viruses: Confronting expectations based on molecular constraints with field observations
Babil Torralba and others
Virus Evolution, Volume 10, Issue 1, 2024, veae010, https://doi.org/10.1093/ve/veae010
Correction
Correction to: Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations—Application to HIV-1 quasispecies
Virus Evolution, Volume 10, Issue 1, 2024, veae038, https://doi.org/10.1093/ve/veae038
Correction to: Contemporary and historical human migration patterns shape hepatitis B virus diversity
Virus Evolution, Volume 10, Issue 1, 2024, veae029, https://doi.org/10.1093/ve/veae029
Correction to: Fitness effects of mutations to SARS-CoV-2 proteins
Virus Evolution, Volume 10, Issue 1, 2024, veae026, https://doi.org/10.1093/ve/veae026
Correction to: Human immunodeficiency virus dynamics in secondary lymphoid tissues and the evolution of cytotoxic T lymphocyte escape mutants
Virus Evolution, Volume 10, Issue 1, 2024, veae052, https://doi.org/10.1093/ve/veae052
Correction to: Cell type-specific adaptation of the SARS-CoV-2 spike
Virus Evolution, Volume 10, Issue 1, 2024, veae057, https://doi.org/10.1093/ve/veae057
Correction to: Natural variation in neuraminidase activity influences the evolutionary potential of the seasonal H1N1 lineage hemagglutinin
Virus Evolution, Volume 10, Issue 1, 2024, veae077, https://doi.org/10.1093/ve/veae077
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