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Journal Article
ACCEPTED MANUSCRIPT
Phylogenetic Insights into the Early Spread of the SARS-CoV-2 Alpha Variant Across Europe
Virus Evolution, veaf030, https://doi.org/10.1093/ve/veaf030
Published: 03 May 2025
Journal Article
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Eco-evolutionary dynamics of temperate phages in periodic environments
Virus Evolution, veaf019, https://doi.org/10.1093/ve/veaf019
Published: 29 April 2025
Journal Article
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Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning
Virus Evolution, veaf026, https://doi.org/10.1093/ve/veaf026
Published: 29 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Exploring genetic signatures of zoonotic influenza A virus at the swine-human interface with phylogenetic and ancestral sequence reconstruction
Virus Evolution, veaf028, https://doi.org/10.1093/ve/veaf028
Published: 26 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Similarity-weighted entropy for quantifying genetic diversity in viral quasispecies
Virus Evolution, veaf029, https://doi.org/10.1093/ve/veaf029
Published: 26 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Evolution and adaptation of dengue virus in response to high temperature passaging in mosquito cells
Virus Evolution, veaf016, https://doi.org/10.1093/ve/veaf016
Published: 24 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Spatiotemporal dispersion of DENV-1 genotype V in western Colombia
Virus Evolution, veaf018, https://doi.org/10.1093/ve/veaf018
Published: 16 April 2025
Journal Article
Evolution of Zika virus in Rag1-deficient mice selects for unique envelope glycosylation motif mutants that show enhanced replication fitness
Virus Evolution, Volume 11, Issue 1, 2025, veaf021, https://doi.org/10.1093/ve/veaf021
Published: 11 April 2025
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Sequences of ZIKVNatal after passage in Rag1-/-...
Published: 11 April 2025
Figure 2.
Sequences of ZIKV Natal after passage in Rag1 -/- mice. (a) Amino acid changes in the ZIKV Natal sequences of viruses in serum of Rag1 -/- mice after passage 5 for each of the three replicate passage series. Sequences were obtained by Nanopore sequencing. Reference genome KU527068.1. (b) Ami
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Glycosylation and replication of glycosylation motif mutants. The following...
Published: 11 April 2025
Figure 3.
Glycosylation and replication of glycosylation motif mutants. The following experiments were conducted using C6/36-derived virus stocks. (a) The indicated viruses were used to infect Vero E6 cells and cell lysates (4 dpi) were treated with PNGase F and analysed by western blotting using the 4G2 anti
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Brain organoid RNA-Seq. (a) Viral read counts per million at 4 dpi for orga...
Published: 11 April 2025
Figure 4.
Brain organoid RNA-Seq. (a) Viral read counts per million at 4 dpi for organoids infected with the indicated virus. Statistic by t -test (not significant). (b) Left—retention of N154D substitution for the ZIKV-N154D after two passages in C6/36 cells and 4 days growth in organoids. Right—no nucleoti
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Passage of ZIKVNatal in Rag1-/- mice. (a) Ex...
Published: 11 April 2025
Figure 1.
Passage of ZIKV Natal in Rag1 -/- mice. (a) Experimental design schematic. Three Rag1 -/- mice were initially infected with ZIKV Natal , when weight loss reached >15%, mice were euthanized and serum passaged to new Rag1 -/- mice; repeated five times in three replicate passage series ( n
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In mice ZIKV-V153D and ZIKV-N154D showed more rapid onset, but shorter vire...
Published: 11 April 2025
Figure 5.
In mice ZIKV-V153D and ZIKV-N154D showed more rapid onset, but shorter viremic periods than ZIKV Natal . (a) Mean viremias in Ifnar -/- mice ( n = 6 per group) after infection with ZIKV Natal , ZIKV-V153D, or ZIKV-N154D. The P values displayed on the graph represent Kolmogorov–Smirnov exact te
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Maximum likelihood analysis of homologous jingmenviruses amino acid sequenc...
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Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 3.
Maximum likelihood analysis of homologous jingmenviruses amino acid sequences: NSP1, NSP2, VP1 (mosquito-derived sequences) or VP2 (insect-derived sequences), and VP4 (mosquito- and insect-derived). The phylogenetic trees were constructed using the LG model, gamma distributed with 100 bootstraps (br
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Percentage identity derived from multiple sequence alignment of SAIV7 strai...
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Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 5.
Percentage identity derived from multiple sequence alignment of SAIV7 strains SKC, OKIAV332, SCMV1, and JVC genomic sequences. The bottom left of each table represents nucleotide identity over the whole genomic segment. The top right of each table corresponds to amino acid percentage identity over t
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Genomic organization of Shuangao insect virus 7 (SAIV7) and Jingmenvirus Ca...
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Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 4.
Genomic organization of Shuangao insect virus 7 (SAIV7) and Jingmenvirus Cameroon (JVC). ORFs are represented by blocks of colour, and translation resulting from a ribosomal frameshift is represented by overlapping blocks in pastel colours, with the position of the frameshift and slippery heptanucle
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Genomic organization of Dysdera bandamae jingmenvirus 1 (DBJV1). O...
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Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 6.
Genomic organization of Dysdera bandamae jingmenvirus 1 (DBJV1). ORFs are represented by blocks of colour, and translation resulting from a ribosomal frameshift is represented by overlapping blocks in pastel colours, with the position of the frameshift and slippery heptanucleotide sequence specifi
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Structural comparison of representative structures of VP1 and bioinformatic...
in
Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 7.
Structural comparison of representative structures of VP1 and bioinformatics analysis. (a) GCXV_VP1 (grey), CTJV1_seg3-1_VP1 (beige), CTJV1_seg3-2_VP1 (blue), FNQJV1_seg3-1_VP1 (green), FNQJV1_seg3-2_VP1 (orange), and SAIV7_VP2 (pink) structures were generated using AlphaFold2 ( Jumper et al. 2021 )
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Structural comparison of representative structures of VP4 and bioinformatic...
in
Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Published: 07 April 2025
Figure 8.
Structural comparison of representative structures of VP4 and bioinformatics analysis. (a) GCXV_VP4 (grey), CTJV1_seg4-1_VP4 (dark blue), CTJV1_seg4-2_VP4 (light blue), FNQJV1_seg4-1_VP4 (dark orange), FNQJV1_seg4-2_VP4 (light orange), SAIV7_seg2-1_VP4 (dark green) and SAIV7_seg2-2_VP4 (light green)
Journal Article
Discovery of additional genomic segments reveals the fluidity of jingmenvirus genomic organization
Virus Evolution, Volume 11, Issue 1, 2025, veaf023, https://doi.org/10.1093/ve/veaf023
Published: 07 April 2025
