... in reproducible workflows via the KBase web application. multiplex network systems biology random walk with restart multi-omic software package DOE 10.13039/100000015 U.S. Department of Energy Office of Science 10.13039/100006132 DE-AC02-05CH11231 DE-SC0021286 Oak Ridge National Laboratory...

... To solve these problems, we propose CDPMiner to discover cooperative driver pathways by attributed multiplex network embedding, which can integrate multi-type omics data at a finer granularity. CDPMiner first optimizes gene–pathway relations based on the pathway internal topology to avoid the negative...

... of multiplex networks. Representing entity connectivity in a multiplex network has now become a reliable way to investigate the functionalities and interactions underlying these entities [ 1 ]. In the case of agricultural networks, connections between farmers, animals, plants and other agricultural entities...

... popular special cases, such as the stochastic block model and the random dot product graph. However, they are not well developed for more complex network structures, which are becoming increasingly common in practice. In this article we propose a new latent space model for multiplex networks, i.e...

...Liang Yu; Mingfei Xia; Qi An drug combination network embedding multiplex network machine learning National Key Research and Development Program of China 10.13039/501100012166 2018YFC0910403 National Natural Science Foundation of China 10.13039/501100001809 62072353 61672406...

... and real-world networks, helping delineate the contexts in which the different frameworks are appropriate. multiplex network diffusion random walks social networks In such a network, we can model intralayer dynamics using any standard flow dynamics—diffusion, epidemic models, etc.—modified to reflect...

... multiplex network analysis, Yu et al. confirm the vulnerability of hub regions in Alzheimer’s disease, which cannot be detected in frequency-specific networks. Perturbed cognitive function and abnormal CSF amyloid-β₄₂ levels correlate with multiplex centrality metrics in Alzheimer’s...

...Petar Veličković; Pietro Liò Here we will make an overview of several recent developments in the area of complex networks (particularly the special case of multiplex networks which is the main focus of the work described in this paper). The principal theoretical foundations for a wide variety...

... propagate across the multiplex networks formed by layers consisting on heterosexual and homosexual contacts, while the co-existence of several online social networks allows social contagion to span across the multiplex networks formed by different online platforms such as Facebook, Twitter and LinkedIn...

... this phenomenology is discussed in a pedagogical way by characterizing the percolation, discontinuous and hybrid transitions. The interplay between structure and function is studied in this context by considering multiplex networks without and with link overlap, and the effect of built-in correlations...

... = 63 , t = 70 , and the fully developed pattern are shown for the Mimura–Murray model with   σ ( v ) = σ ( u ) = 0.12  on a multiplex network with scale-free layers of   N = 1,000  nodes and mean degrees...

..., multiplex networks, simplicial complexes, and hypergraphs. Here, we are going to introduce interconnected multilayer networks, analyzing them from just a few fronts: types of multilayer networks, their mathematical description, the dynamics of random walkers, and the centrality (versatility) of nodes...

... set on a plane. To introduce more complicated underlying space, multiplex networks (which are defined with layers of interaction on the same underlying node set) and temporal (time-dependent) networks are discussed. It shown that despite the much more complicated underlying space, many...

....   Science 337: 349–51. Mucha, P. J. , Richardson, T. , Macon, K. , Porter, M. A. , and Onnela, J. -P. ( 2010 ). Community structure in time-dependent, multiscale, and multiplex networks.   Science 328: 876–8. Neutel, A. -M. , Heesterbeek, J. A. P...

... the person’s relationships. This social network is resolved in two multiplex networks: (a) The layers correspond to different types of relationships or contexts, as obtained from combination of metadata and community detection. Only the four most important relationships are shown (four layers from the top...

... multilayer network technological network temporal network multiplex network connected network forest river network root node rooted tree tree AVL tree Bethe lattice Cayley tree dendrogram lattice locally tree like network minimum spanning tree random graph red black tree planar network...

.... The mathematical definition of multilayer networks is given in full generality and subsequently applied to specific types of multilayer networks including multiplex networks, multi-slice networks and networks of networks, motivating the discussion with examples and applications. The fundamental terminology used...

...Multilayer Networks. Ginestra Bianconi, Oxford University Press (2018). © Ginestra Bianconi. DOI: 10.1093/oso/9780198753919.001.0001 Multiplex networks encode relevant information in their correlated structure, including interlayer degree correlation, link overlap, weight–topology...

...Multilayer Networks. Ginestra Bianconi, Oxford University Press (2018). © Ginestra Bianconi. DOI: 10.1093/oso/9780198753919.001.0001 This chapter presents the existing modelling frameworks for multiplex and multilayer networks. Multiplex network models are divided into growing...