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Keywords: Subsampling
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Journal Article
Juliette Blanchet and others
Journal of the Royal Statistical Society Series C: Applied Statistics, qlae068, https://doi.org/10.1093/jrsssc/qlae068
Published: 29 November 2024
... or exceed clusters timeout. We suggest different subsampling strategies strongly reducing the number of events to overcome these difficulties and show how they can be used to draw conclusions on the initial point pattern. global envelope test kernel estimation Ripley’s K function space–time point...
Journal Article
Daniel Nicholls and others
Microscopy and Microanalysis, Volume 30, Issue 1, February 2024, Pages 96–102, https://doi.org/10.1093/micmic/ozae005
Published: 07 February 2024
... imaging beam sensitive materials, these images are often compromised by additional constraints related to beam damage and the devitrification of the material during imaging, which renders data acquisition both costly and unreliable. Subsampling and inpainting are proposed as solutions for both...
Journal Article
Xingguang Li and others
Virus Evolution, Volume 9, Issue 2, 2023, vead069, https://doi.org/10.1093/ve/vead069
Published: 22 November 2023
... the effect of dataset subsampling based on a combination of traits (date, country, and PGRHA) on phylogenetic inference and subsequent downstream analysis, such as ancestral trait reconstruction and phylogeographic inference. We subsample and analyze two large HIV-1 Subtype C datasets with sequences...
Journal Article
Yexiao Cheng and others
Virus Evolution, Volume 8, Issue 2, 2022, veac071, https://doi.org/10.1093/ve/veac071
Published: 05 August 2022
... problematic sequencing or assembly. After constructing the divergent pathways, the subsampling procedure is performed based on these divergent pathways. First, genomes in the original data set are hierarchically divided into subsampling units, which are groups containing genomes with or within the same...
Journal Article
Yudong Wang and others
Journal of the Royal Statistical Society Series B: Statistical Methodology, Volume 84, Issue 4, September 2022, Pages 1503–1525, https://doi.org/10.1111/rssb.12541
Published: 21 June 2022
... of the first, in which subsampling is used to construct an incomplete U-statistic. Both methods are affine invariant and can readily be extended to partially paired two-sample tests with unordered samples. Asymptotic null distributions of the proposed test statistics are derived and the local powers...
Journal Article
Robert Lunde and Purnamrita Sarkar
Biometrika, Volume 110, Issue 1, March 2023, Pages 15–32, https://doi.org/10.1093/biomet/asac032
Published: 02 June 2022
... is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( https://dbpia.nl.go.kr/journals/pages/open_access/funder_policies/chorus/standard_publication_model ) Summary We study the properties of two subsampling procedures for networks, vertex...
Journal Article
Andreas Piter and others
Journal of the Royal Statistical Society Series A: Statistics in Society, Volume 185, Issue 3, July 2022, Pages 1294–1318, https://doi.org/10.1111/rssa.12834
Published: 12 April 2022
.... For this completely novel approach, we apply a functional spatiotemporal hierarchical model to investigate the effect of environmental factors and the magnitude of the spatial and temporal dependence. Challenges in computational complexity are faced using a Monte Carlo subsampling approach. The results show...
Journal Article
Darya Chyzhyk and others
GigaScience, Volume 11, 2022, giac014, https://doi.org/10.1093/gigascience/giac014
Published: 12 March 2022
... effects gives an additional piece of information: confound-free prediction accuracy. confound subsampling phenotype predictive models biomarkers statistical testing deconfounding Child Mind Institute 10.13039/100017974 Predictive models, using machine learning, are becoming a standard tool...
Journal Article
Jinshuo Dong and others
Journal of the Royal Statistical Society Series B: Statistical Methodology, Volume 84, Issue 1, February 2022, Pages 3–37, https://doi.org/10.1111/rssb.12454
Published: 21 February 2022
... primitives like privacy amplification by subsampling. Inspired by the hypothesis testing formulation of privacy, this paper proposes a new relaxation of differential privacy, which we term ‘f-differential privacy’ (f-DP). This notion of privacy has a number of appealing properties...
Journal Article
Joshua L Smith and Derek J Adams
Journal of Medical Entomology, Volume 59, Issue 1, January 2022, Pages 380–383, https://doi.org/10.1093/jme/tjab175
Published: 13 October 2021
... subsampling guidelines sex-specific development Washburn University 10.13039/100006675 The age of a blow fly larva from a body, assuming eggs were laid after a person died, can provide an estimate of the minimum time since death ( Catts and Goff 1992 ). The estimate of larval age is based on a comparison...
Journal Article
T A Kuffner and others
Biometrika, Volume 108, Issue 3, September 2021, Pages 675–692, https://doi.org/10.1093/biomet/asaa075
Published: 14 September 2020
...T A Kuffner; S M S Lee; G A Young The subsampling bootstrap ( Politis & Romano, 1994 ), and specifically the overlapping blocks version relevant to the present setting, first splits the original sample into precisely the same overlapping blocks as the moving block bootstrap, each of length...
Journal Article
Haiying Wang and Yanyuan Ma
Biometrika, Volume 108, Issue 1, March 2021, Pages 99–112, https://doi.org/10.1093/biomet/asaa043
Published: 21 July 2020
... optimal subsampling for quantile regression. We derive the asymptotic distribution of a general subsampling estimator and then derive two versions of optimal subsampling probabilities. One version minimizes the trace of the asymptotic variance-covariance matrix for a linearly transformed parameter...
Journal Article
Qifan Song and others
Biometrika, Volume 107, Issue 4, December 2020, Pages 997–1004, https://doi.org/10.1093/biomet/asaa029
Published: 13 July 2020
... that the proposed algorithm is highly scalable and much more efficient than traditional Markov chain Monte Carlo algorithms. Dimension jumping Missing data Stochastic gradient Langevin dynamics Subsampling After six decades of continual development, Markov chain Monte Carlo, MCMC, has proven to be a powerful...
Journal Article
Deborshee Sen and others
Biometrika, Volume 107, Issue 4, December 2020, Pages 1005–1012, https://doi.org/10.1093/biomet/asaa035
Published: 17 June 2020
... become inefficient as the number of predictors or the number of subjects to classify gets large, because of the increasing computational time per step and worsening mixing rates. One strategy is to employ a gradient-based sampler to improve mixing while using data subsamples to reduce the per...
Journal Article
Veronika Boskova and Tanja Stadler
Molecular Biology and Evolution, Volume 37, Issue 10, October 2020, Pages 3061–3075, https://doi.org/10.1093/molbev/msaa136
Published: 03 June 2020
... to a real, within-host HIV sequencing data set with several thousand sequences per patient. Bayesian phylodynamics duplicate sequences subsampling large data sets BEAST 2 fast algorithms The reconstructed haplotypes are then aligned to create a multiple sequence alignment. Before it can be used...
Journal Article
Tim Coleman and others
Journal of the Royal Statistical Society Series C: Applied Statistics, Volume 69, Issue 4, August 2020, Pages 973–989, https://doi.org/10.1111/rssc.12416
Published: 09 May 2020
... forests Subsampling U-statistics Address for correspondence: Tim Coleman, Department of Statistics, University of Pittsburgh, 1800 Wesley W. Posvar Hall, 230 South Bouquet Street, Pittsburgh, PA 15260, USA. E-mail: [email protected] 01 2019 03 2020 © 2020 Royal Statistical Society 2020...
Journal Article
Cheng Meng and others
Biometrika, Volume 107, Issue 3, September 2020, Pages 723–735, https://doi.org/10.1093/biomet/asaa019
Published: 07 May 2020
... method leads to a smaller prediction error than other basis selection methods. Nonparametric regression Penalized least squares criterion Space-filling design Star discrepancy Subsampling Consider the nonparametric regression model , where is the th observation of the response...
Journal Article
Ane De Celis and others
Zoological Journal of the Linnean Society, Volume 189, Issue 2, June 2020, Pages 635–656, https://doi.org/10.1093/zoolinnean/zlz038
Published: 04 July 2019
...Ane De Celis; Iván Narváez; Francisco Ortega Alligatoroidea Crocodylia Crocodyloidea Gavialoidea macroevolution palaeotemperature shareholder quorum subsampling To analyse the relationship between subsampled eusuchian palaeodiversity and possible drivers, we compiled data from environmental...
Journal Article
Xianwen Ren and others
Genomics, Proteomics & Bioinformatics, Volume 17, Issue 2, April 2019, Pages 201–210, https://doi.org/10.1016/j.gpb.2018.10.003
Published: 13 June 2019
...) data but the rapidly expanding data volume can make this process computationally challenging. New methods for both accurate and efficient clustering are of pressing need. Here we proposed Spearman subsampling -clustering- classification (SSCC), a new clustering framework based on random projection...
Journal Article
Stephen J. Kaputa and others
Journal of the Royal Statistical Society Series A: Statistics in Society, Volume 182, Issue 4, October 2019, Pages 1371–1391, https://doi.org/10.1111/rssa.12448
Published: 15 May 2019
... procedure that sends a certified letter to all non-responding units. The second studied adaptive design restricts the non-response follow-up for the probability subsample of non-respondents selected for the targeted allocation. We compare the quality effects of the two studied adaptive non-response follow...