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Keywords: Semantic Web
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Journal Article
Rion Brattig Correia and others
Journal of the American Medical Informatics Association, ocaf012, https://doi.org/10.1093/jamia/ocaf012
Published: 31 January 2025
...-powered patient self-management in epilepsy and can be generalized to other chronic conditions. epilepsy self-management semantic web systems analysis social media data visualization National Institutes of Health 10.13039/100000002 1R01LM012832 The chronic health disorder epilepsy affects more...
Journal Article
Marco Giunti and Simone Pinna
Logic Journal of the IGPL, jzae085, https://doi.org/10.1093/jigpal/jzae085
Published: 11 November 2024
..., Standard Journals Publication Model ( https://dbpia.nl.go.kr/pages/standard-publication-reuse-rights ) Abstract The vision underlying the development of the Semantic Web is that the whole complex of our knowledge forms a huge semantic network, which should be represented and made explicit by means...
Journal Article
Varsha Gouthamchand and others
BJR|Artificial Intelligence, Volume 1, Issue 1, January 2024, ubae005, https://doi.org/10.1093/bjrai/ubae005
Published: 06 March 2024
... was converted into Resource Descriptor Format (RDF), 20 which is the primary building block of the Semantic Web Query and Retrieval Language (SPARQL), 21 using an open-source software library known as triplifier. 22 To minimize the amount of coding and scripting...
Journal Article
Bart Nijsse and others
GigaScience, Volume 12, 2023, giad014, https://doi.org/10.1093/gigascience/giad014
Published: 06 March 2023
... to build searchable metadata databases of similar projects and can assist in ENA metadata submission of sequence data. The FAIR Data Station is available at https://fairbydesign.nl . FAIR metadata MIxS standards ENA submission tool semantic web ontologies NWO 10.13039/501100003246 Wageningen...
Journal Article
Atsushi Fukushima and others
Plant and Cell Physiology, Volume 63, Issue 3, March 2022, Pages 433–440, https://doi.org/10.1093/pcp/pcab173
Published: 17 December 2021
...  Plant metabolism  Semantic web A number of databases containing information related to metabolome analysis have been established in recent decades ( Horai et al. 2010 , Fukushima and Kusano 2013 , Gurevich et al. 2018 , Wishart et al. 2018 , 2020 ). Since the establishment of the Metabolomics...
Journal Article
Issaku Yamada and others
Glycobiology, Volume 31, Issue 7, July 2021, Pages 741–750, https://doi.org/10.1093/glycob/cwab013
Published: 23 February 2021
... ratio, disease, bibliographic information, sample information, etc. By integrating data constructed using GlycoCoO through Semantic Web technology, not only can life science researchers improve convenience when using these databases, but also more users across other fields can be expected to take...
Journal Article
Marco Giunti and others
Logic Journal of the IGPL, Volume 29, Issue 4, August 2021, Pages 697–717, https://doi.org/10.1093/jigpal/jzz047
Published: 18 November 2019
...Marco Giunti; Giuseppe Sergioli; Giuliano Vivanet; Simone Pinna The development of the Semantic Web originated from the view that the whole complex of our knowledge may eventually be translated into a machine-readable language, which will be interpreted and understood by artificial agents...
Journal Article
Daniela Oliveira and others
Briefings in Bioinformatics, Volume 20, Issue 4, July 2019, Pages 1477–1491, https://doi.org/10.1093/bib/bby015
Published: 20 March 2018
... retrieval ranking algorithms ontology healthcare and life sciences semantic Web linked data The biomedical domain has a long history of using formal vocabularies, terminologies, codes and ontologies to describe data sets ranging from genetics, molecular or chemical domains to patients receiving...
Journal Article
Wassim Derguech and others
The Computer Journal, Volume 61, Issue 7, July 2018, Pages 1075–1098, https://doi.org/10.1093/comjnl/bxy011
Published: 07 March 2018
... approach. business capability business process service RDF semantic web In current business process models, the functional perspective (also can be referred to in the literature as business capability, functionality or business function) for each process activity is limited to its label [ 1...
Journal Article
Md Rezaul Karim and others
Briefings in Bioinformatics, Volume 19, Issue 5, September 2018, Pages 1035–1050, https://doi.org/10.1093/bib/bbx039
Published: 16 April 2017
.... As moving the data becomes cumbersome, the DWFS needs to embed its processes into a cloud infrastructure, where the data are already hosted. As the standardized public data play an increasingly important role, the DWFS needs to comply with Semantic Web technologies. This advancement to DWFS would reduce...
Journal Article
Georgios V Gkoutos and others
Briefings in Bioinformatics, Volume 19, Issue 5, September 2018, Pages 1008–1021, https://doi.org/10.1093/bib/bbx035
Published: 06 April 2017
... content of phenotype ontologies and how their content can be used computationally. phenotype ontology PATO data integration Semantic Web The distinction between genotype and phenotype was first made by the Danish botanist Wilhelm Johannsen in 1909 [ 1 ] and disseminated in a later paper in English...
Journal Article
Adeeb Noor and others
Journal of the American Medical Informatics Association, Volume 24, Issue 3, May 2017, Pages 556–564, https://doi.org/10.1093/jamia/ocw128
Published: 23 December 2016
... clinical adverse events and were limited to 345 drugs. 15 Another profound challenge in understanding DDIs is the lack of reporting of their mechanistic causes. For instance, although Jiang et al. 16 developed and evaluated a Semantic Web–based approach for mining severe DDI-induced...
Journal Article
Mikel Egaña Aranguren and Mark D. Wilkinson
GigaScience, Volume 4, Issue 1, December 2015, s13742-015-0092-3, https://doi.org/10.1186/s13742-015-0092-3
Published: 03 December 2015
... ( http://creativecommons.org/publicdomain/zero/1.0/ ) applies to the data made available in this article, unless otherwise stated. Abstract Background Semantic Web technologies have been widely applied in the life sciences, for example by data providers such as OpenLifeData and through web services...
Journal Article
Robert Hoehndorf and others
Briefings in Bioinformatics, Volume 16, Issue 6, November 2015, Pages 1069–1080, https://doi.org/10.1093/bib/bbv011
Published: 10 April 2015
... their application in structured data mining and machine learning applications. ontology Semantic Web data integration data mining The principal components of ontologies are classes and relations. A ‘class’ is an entity that refers to a set of entities in the world, such as the class ‘Protein’ (referring...
Journal Article
Naeem Khalid Janjua and others
The Computer Journal, Volume 58, Issue 9, September 2015, Pages 1967–1999, https://doi.org/10.1093/comjnl/bxu057
Published: 10 July 2014
..., and provides critical analysis that emphasizes the structure of arguments and the interactions between them. This review compares and contrasts the frameworks and applications of argumentation-based approaches on Web 2.0 and the Semantic Web, and subsequently highlights the importance and challenges...
Journal Article
Catia M. Machado and others
Briefings in Bioinformatics, Volume 16, Issue 1, January 2015, Pages 89–103, https://doi.org/10.1093/bib/bbt079
Published: 06 November 2013
... domains, of explicit data representations, and of interoperability of the data resources, which hinder the sharing of data between the biomedical and the clinical domains [ 9 ]. Tim Berners-Lee et al. proposed the vision of the semantic web, where the web of documents is replaced by the web of data, thus...
Journal Article
Cui Tao and others
Journal of the American Medical Informatics Association, Volume 20, Issue 3, May 2013, Pages 554–562, https://doi.org/10.1136/amiajnl-2012-001326
Published: 25 December 2012
... to represent the CEM specification using the Web Ontology Language (OWL). The CEM-OWL representation connects the CEM content with the Semantic Web environment, which provides authoring, reasoning, and querying tools. This work may also facilitate the harmonization of the CEMs with domain knowledge represented...
Journal Article
I-Ching Hsu
The Computer Journal, Volume 55, Issue 9, September 2012, Pages 1118–1129, https://doi.org/10.1093/comjnl/bxs040
Published: 26 April 2012
... is also used as a broker for personalized Web resource searches made for individual needs. The experimental results show that the proposed approach has higher precision and recall than the traditional term frequency scheme. social tag ontology Semantic Web Web 2.0 folksonomy © The Author 2012...
Journal Article
FOCUS ON CLINICAL RESEARCH INFORMATICS
Guoqian Jiang and others
Journal of the American Medical Informatics Association, Volume 19, Issue e1, June 2012, Pages e129–e136, https://doi.org/10.1136/amiajnl-2011-000739
Published: 17 April 2012
... the UMLS semantic types and groups. We integrate the CDEs of the NCI caDSR, the NCI Thesaurus (NCIt) concepts and the UMLS semantic groups using a semantic web framework for a SPARQL-enabled evaluation. We demonstrate that the involvement of multiple semantic groups for asserted terminological annotations...
Journal Article
Huajun Chen and others
Briefings in Bioinformatics, Volume 14, Issue 1, January 2013, Pages 109–125, https://doi.org/10.1093/bib/bbs014
Published: 06 April 2012
... ]. However, the current Web still lacks a widely-accepted and standard way to publish and share structured data, leading to the difficulty of achieving global data integration [ 12 ]. In order to fill the data gap on the Web, Tim Berners-Lee et al. envisioned the Semantic Web (SW) as a web of data...