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Authors: Shunmin He
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The Pathogen Adaptation of HLA Alleles and the Correlation with Autoimmune Diseases in the Han Chinese

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Shuai Liu and others
Genomics, Proteomics & Bioinformatics, qzaf038, https://doi.org/10.1093/gpbjnl/qzaf038
Published: 29 April 2025
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Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis

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Haiyan Yue and others
Genomics, Proteomics & Bioinformatics, Volume 22, Issue 6, December 2024, qzae079, https://doi.org/10.1093/gpbjnl/qzae079
Published: 04 November 2024
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MAPbrain: a multi-omics atlas of the primate brain

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Liangchen Zhuo and others
Nucleic Acids Research, Volume 53, Issue D1, 6 January 2025, Pages D1055–D1065, https://doi.org/10.1093/nar/gkae911
Published: 18 October 2024
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Adaptive Selection of Cis-regulatory Elements in the Han Chinese

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Shuai Liu and others
Molecular Biology and Evolution, Volume 41, Issue 3, March 2024, msae034, https://doi.org/10.1093/molbev/msae034
Published: 20 February 2024
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Was Wuhan the early epicenter of the COVID-19 pandemic?—A critique

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Yanan Cao and others
National Science Review, Volume 10, Issue 4, April 2023, nwac287, https://doi.org/10.1093/nsr/nwac287
Published: 22 December 2022
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NPInter v5.0: ncRNA interaction database in a new era

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Yu Zheng and others
Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages D232–D239, https://doi.org/10.1093/nar/gkac1002
Published: 14 November 2022
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Characterizing mobile element insertions in 5675 genomes

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Yiwei Niu and others
Nucleic Acids Research, Volume 50, Issue 5, 21 March 2022, Pages 2493–2508, https://doi.org/10.1093/nar/gkac128
Published: 25 February 2022
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piRBase: integrating piRNA annotation in all aspects

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Jiajia Wang and others
Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D265–D272, https://doi.org/10.1093/nar/gkab1012
Published: 06 December 2021
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SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling

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Yanyan Li and others
Genomics, Proteomics & Bioinformatics, Volume 19, Issue 4, August 2021, Pages 602–610, https://doi.org/10.1016/j.gpb.2021.09.002
Published: 15 September 2021
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NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants

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Lianhe Zhao and others
Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D165–D171, https://doi.org/10.1093/nar/gkaa1046
Published: 16 November 2020
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NPInter v4.0: an integrated database of ncRNA interactions

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Xueyi Teng and others
Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D160–D165, https://doi.org/10.1093/nar/gkz969
Published: 31 October 2019
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piRBase: a comprehensive database of piRNA sequences

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Jiajia Wang and others
Nucleic Acids Research, Volume 47, Issue D1, 08 January 2019, Pages D175–D180, https://doi.org/10.1093/nar/gky1043
Published: 29 October 2018
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Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data

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Ya Cui and others
Briefings in Bioinformatics, Volume 19, Issue 6, November 2018, Pages 1302–1309, https://doi.org/10.1093/bib/bbx059
Published: 01 June 2017
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SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci

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Yajing Hao and others
Briefings in Bioinformatics, Volume 19, Issue 4, July 2018, Pages 636–643, https://doi.org/10.1093/bib/bbx005
Published: 29 January 2017
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LncVar: a database of genetic variation associated with long non-coding genes

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Xiaowei Chen and others
Bioinformatics, Volume 33, Issue 1, January 2017, Pages 112–118, https://doi.org/10.1093/bioinformatics/btw581
Published: 06 September 2016
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BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications

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Ya Cui and others
Bioinformatics, Volume 32, Issue 11, June 2016, Pages 1740–1742, https://doi.org/10.1093/bioinformatics/btw041
Published: 27 January 2016
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Computational identification of piRNA targets on mouse mRNAs

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Jiao Yuan and others
Bioinformatics, Volume 32, Issue 8, April 2016, Pages 1170–1177, https://doi.org/10.1093/bioinformatics/btv729
Published: 16 December 2015
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piRBase: a web resource assisting piRNA functional study

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Peng Zhang and others
Database, Volume 2014, 2014, bau110, https://doi.org/10.1093/database/bau110
Published: 23 November 2014
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The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression

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Yunfei Wang and others
Nucleic Acids Research, Volume 39, Issue 12, 1 July 2011, Pages 5203–5214, https://doi.org/10.1093/nar/gkr102
Published: 04 March 2011
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NONCODE v2.0: decoding the non-coding

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Shunmin He and others
Nucleic Acids Research, Volume 36, Issue suppl_1, 1 January 2008, Pages D170–D172, https://doi.org/10.1093/nar/gkm1011
Published: 13 November 2007