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Authors: Fabrizio Costa
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Journal Article

Advances in fruit development and ripening

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Sonia Osorio and others
Journal of Experimental Botany, Volume 74, Issue 20, 31 October 2023, Pages 6205–6206, https://doi.org/10.1093/jxb/erad379
Published: 31 October 2023
Journal Article

Molecular regulation of apple and grape ripening: exploring common and distinct transcriptional aspects of representative climacteric and non-climacteric fruits

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Sara Zenoni and others
Journal of Experimental Botany, Volume 74, Issue 20, 31 October 2023, Pages 6207–6223, https://doi.org/10.1093/jxb/erad324
Published: 17 August 2023
Journal Article

Genomic prediction of fruit texture and training population optimization towards the application of genomic selection in apple

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Morgane Roth and others
Horticulture Research, Volume 7, 2020, 148, https://doi.org/10.1038/s41438-020-00370-5
Published: 01 September 2020
Journal Article

Investigation of the transcriptomic and metabolic changes associated with superficial scald physiology impaired by lovastatin and 1-methylcyclopropene in pear fruit (cv. “Blanquilla”)

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Jordi Giné-Bordonaba and others
Horticulture Research, Volume 7, 2020, 49, https://doi.org/10.1038/s41438-020-0272-x
Published: 01 April 2020
Journal Article

Heterogeneous networks integration for disease–gene prioritization with node kernels

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Van Dinh Tran and others
Bioinformatics, Volume 36, Issue 9, May 2020, Pages 2649–2656, https://doi.org/10.1093/bioinformatics/btaa008
Published: 28 January 2020
Journal Article

GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

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Milad Miladi and others
GigaScience, Volume 8, Issue 12, December 2019, giz150, https://doi.org/10.1093/gigascience/giz150
Published: 06 December 2019
Journal Article

ShaKer: RNA SHAPE prediction using graph kernel

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Stefan Mautner and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i354–i359, https://doi.org/10.1093/bioinformatics/btz395
Published: 05 July 2019
Journal Article

Apple whole genome sequences: recent advances and new prospects

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Cameron P Peace and others
Horticulture Research, Volume 6, 2019, 59, https://doi.org/10.1038/s41438-019-0141-7
Published: 05 April 2019
Journal Article

Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit

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Nicola Busatto and others
Horticulture Research, Volume 6, 2019, 32, https://doi.org/10.1038/s41438-018-0115-1
Published: 01 March 2019
Journal Article

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

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Martin Raden and others
Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W25–W29, https://doi.org/10.1093/nar/gky329
Published: 21 May 2018
Journal Article

An efficient graph kernel method for non-coding RNA functional prediction

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Nicolò Navarin and Fabrizio Costa
Bioinformatics, Volume 33, Issue 17, September 2017, Pages 2642–2650, https://doi.org/10.1093/bioinformatics/btx295
Published: 05 May 2017
Journal Article

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

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Milad Miladi and others
Bioinformatics, Volume 33, Issue 14, July 2017, Pages 2089–2096, https://doi.org/10.1093/bioinformatics/btx114
Published: 27 February 2017
Journal Article

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture

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Brian Farneti and others
Journal of Experimental Botany, Volume 68, Issue 7, 1 March 2017, Pages 1467–1478, https://doi.org/10.1093/jxb/erx018
Published: 24 February 2017
Journal Article

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association

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Mario Di Guardo and others
Journal of Experimental Botany, Volume 68, Issue 7, 1 March 2017, Pages 1451–1466, https://doi.org/10.1093/jxb/erx017
Published: 24 February 2017
Journal Article

MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms Get access

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Justin Lashbrooke and others
The Plant Cell, Volume 28, Issue 9, September 2016, Pages 2097–2116, https://doi.org/10.1105/tpc.16.00490
Published: 07 September 2016
Journal Article

Characterizing leader sequences of CRISPR loci

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Omer S Alkhnbashi and others
Bioinformatics, Volume 32, Issue 17, September 2016, Pages i576–i585, https://doi.org/10.1093/bioinformatics/btw454
Published: 29 August 2016
Journal Article

RNAcommender: genome-wide recommendation of RNA–protein interactions

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Gianluca Corrado and others
Bioinformatics, Volume 32, Issue 23, December 2016, Pages 3627–3634, https://doi.org/10.1093/bioinformatics/btw517
Published: 08 August 2016
Journal Article

The Tomato MIXTA-Like Transcription Factor Coordinates Fruit Epidermis Conical Cell Development and Cuticular Lipid Biosynthesis and Assembly Get access

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Justin Lashbrooke and others
Plant Physiology, Volume 169, Issue 4, December 2015, Pages 2553–2571, https://doi.org/10.1104/pp.15.01145
Published: 06 October 2015
Journal Article

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species

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Mario Di Guardo and others
Bioinformatics, Volume 31, Issue 23, December 2015, Pages 3873–3874, https://doi.org/10.1093/bioinformatics/btv446
Published: 06 August 2015
Journal Article

Genome investigation suggests MdSHN3, an APETALA2-domain transcription factor gene, to be a positive regulator of apple fruit cuticle formation and an inhibitor of russet development

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Justin Lashbrooke and others
Journal of Experimental Botany, Volume 66, Issue 21, November 2015, Pages 6579–6589, https://doi.org/10.1093/jxb/erv366
Published: 28 July 2015