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DIGITtally—a new tool for streamlining and simplifying Drosophila melanogaster meta-analysis
Andrew Gillen and others
Nucleic Acids Research, gkaf393, https://doi.org/10.1093/nar/gkaf393
Drosophila melanogaster has one of the deepest research bases within the life sciences, with a wealth of high-quality tissue- and cell type-specific transcriptomic data available. However, integrating large datasets derived from disparate sources is not trivial. We have designed a broadly ...
BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies
Jennifer Vendetti and others
Nucleic Acids Research, gkaf402, https://doi.org/10.1093/nar/gkaf402
BioPortal ( https://bioportal.bioontology.org ) is the world’s most comprehensive repository of biomedical ontologies. It provides infrastructure for finding, sharing, searching, and utilizing biomedical ontologies. Launched in 2005, BioPortal now includes 1549 ontologies (1182 of them public). Its ...
BeStSel: analysis site for protein CD spectra—2025 update
András Micsonai and others
Nucleic Acids Research, gkaf378, https://doi.org/10.1093/nar/gkaf378
Circular dichroism (CD) spectroscopy is a widely used technique to characterize the secondary structure composition of proteins. We have developed the Beta Structure Selection (BeStSel) method (PNAS, 112, E3095), which solves the main problem of protein CD spectroscopy—namely, the spectral ...
AutoMLST2: a web server for phylogeny and microbial taxonomy
Bita Pourmohsenin and others
Nucleic Acids Research, gkaf397, https://doi.org/10.1093/nar/gkaf397
Accurate and accessible phylogenetic analysis is essential for understanding microbial taxonomy and evolution, which are integral to microbiology, ecology, and drug discovery, yet it remains a challenging task. AutoMLST2 ( https://automlst2.ziemertlab.com ) is a web server designed to facilitate ...
AmrProfiler: a comprehensive tool for identifying antimicrobial resistance genes and mutations across species
Anargyros Skoulakis and others
Nucleic Acids Research, gkaf400, https://doi.org/10.1093/nar/gkaf400
Antimicrobial resistance (AMR) remains a critical challenge in public health and research. AmrProfiler is a comprehensive tool with three specialized modules: identifying acquired AMR genes, resistance-associated mutations, and ribosomal RNA (rRNA) gene mutations across nearly 18 000 bacterial ...

Breakthrough Articles

NAR Breakthrough Article
Monitoring monomer-specific acyl–tRNA levels in cells with PARTI
Meghan A Pressimone and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf327, https://doi.org/10.1093/nar/gkaf327
There is enormous interest in generating proteins composed of monomers that are not ⍺-amino acids. Doing so in cells demands high levels of precisely acylated transfer RNA (tRNA) molecules. However it is exceptionally challenging to simultaneously determine precisely how much of a cellular tRNA is acylated, what it is acylated with, and whether it has been acylated once or twice. The assay ...
NAR Breakthrough Article
Unexpected enzymatic function of an ancient nucleic acid-binding fold
Rylan R Watkins and others
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf328, https://doi.org/10.1093/nar/gkaf328
Aminoacyl-tRNA synthetases (ARSs) are crucial enzymes found in all living things. They help make proteins by attaching specific building blocks (amino acids) to tRNAs, molecules that deliver the building blocks to the site of protein production. When ARS’s make mistakes, they are fixed by special tRNA-editing proteins. In more complex organisms, ARSs assemble with other non-ARS proteins in the ...
NAR Breakthrough Article
Systematic genetic perturbation reveals principles underpinning robustness of the epigenetic regulatory network
Thomas Stuart Wilson and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf297, https://doi.org/10.1093/nar/gkaf297
Cells regulate their DNA through a network of proteins that shape chromatin structure and modify chemical markers. While many pathways have been studied individually, how they interact to maintain stability remains unclear. We investigated this by disrupting 200 genes involved in epigenetic regulation, one by one or in combination, to reveal their interactions. We found that most regulators are ...
NAR Breakthrough Article
A new level of RNA-based plant protection: dsRNAs designed from functionally characterized siRNAs highly effective against Cucumber mosaic virus
Marie Knoblich and others
Nucleic Acids Research, Volume 53, Issue 5, 24 March 2025, gkaf136, https://doi.org/10.1093/nar/gkaf136
RNA-mediated crop protection offers a promising alternative to harmful agrochemicals by using pathogen-derived double-stranded RNAs (dsRNAs) that are processed into small interfering RNAs (siRNAs) in plants. These siRNAs can silence viral genomes, but current dsRNAs are often ineffective. The authors have developed a method to identify effective siRNAs ( e siRNAs) against the Cucumber mosaic ...
NAR Breakthrough Article
ProQ prevents mRNA degradation through inhibition of poly(A) polymerase
Sofia Bergman and others
Nucleic Acids Research, Volume 53, Issue 5, 24 March 2025, gkaf103, https://doi.org/10.1093/nar/gkaf103
The bacterial ProQ/FinO family of RNA-binding proteins influence major traits such as motility, horizontal gene transfer, virulence, and biofilm formation. However, molecular mechanisms explaining how these proteins influence RNA ligand activity has been lacking. This study proposes that ProQ/FinO proteins stabilize RNA by counteracting polyadenylation. The authors first show that ProQ promotes ...
Impact Factor
16.7
5 year Impact Factor
16.1
CiteScore
27.1
H5-index
233
Biochemistry & Molecular Biology
6 out of 313

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Standard Research Articles

Standard research articles are published on a variety of subject categories including chemical biology and nucleic acid chemistry, computational biology, data resources and analyses, gene regulation, chromatin and epigenetics, molecular biology, RNA and RNA-protein complexes, structural biology and more.

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Nucleic Acids Research publishes methods manuscripts that detail methodological developments of highest originality and usefulness within NAR's core subject areas. Methods papers should report novel techniques, significant advances in existing techniques, and/or demonstration novel utility or advantage to an extended, rather than a specialist, audience. 

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Critical Reviews and Perspectives

Critical Reviews and Perspectives are dedicated to reviews relevant to the journal's core areas of interest in DNA/RNA function and the structure and interactions of proteins involved in nucleic acid interactions. These papers are by invitation only, but NAR welcomes unsolicited proposals. 

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Database & Web Server Articles

Nucleic Acids Research publishes two special online issues, a biological databases one in January of each year, and a web-based software resources of value to the biological community one in July of each year. 

Database articles

Web Server articles

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Nobel Prize winning research from NAR authors

Congratulations to Katalin Karikó and Drew Weissman on being awarded the 2023 Nobel Prize in Physiology or Medicine for their discoveries concerning nucleoside base modifications that enabled the development of effective mRNA vaccines against COVID-19.

Read the NAR article cited as a key publication in this research, 'Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation'. 

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In addition to Nucleic Acids Research, the following two journals are published under the NAR umbrella following the same commitment to open access, reputable, and cutting-edge research for scientists by scientists. 

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