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Volume 41, Issue 13, 1 July 2013
Computational Biology
The Impact of Trans-Regulation on the Evolutionary Rates of Metazoan Proteins
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6371–6380, https://doi.org/10.1093/nar/gkt349
The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6381–6390, https://doi.org/10.1093/nar/gkt351
Gene Regulation, Chromatin and Epigenetics
Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6391–6402, https://doi.org/10.1093/nar/gkt355
The proto-oncoprotein FBI-1 interacts with MBD3 to recruit the Mi-2/NuRD-HDAC complex and BCoR and to silence p21WAF/CDKN1A by DNA methylation
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6403–6420, https://doi.org/10.1093/nar/gkt359
Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6421–6429, https://doi.org/10.1093/nar/gkt360
Polycomb recruitment attenuates retinoic acid–induced transcription of the bivalent NR2F1 gene
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6430–6443, https://doi.org/10.1093/nar/gkt367
Genome Integrity, Repair and Replication
FANCD2 regulates BLM complex functions independently of FANCI to promote replication fork recovery
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6444–6459, https://doi.org/10.1093/nar/gkt348
Activation of a human chromosomal replication origin by protein tethering
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6460–6474, https://doi.org/10.1093/nar/gkt368
Caffeine suppresses homologous recombination through interference with RAD51-mediated joint molecule formation
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6475–6489, https://doi.org/10.1093/nar/gkt375
Tel1 and Rad51 are involved in the maintenance of telomeres with capping deficiency
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6490–6500, https://doi.org/10.1093/nar/gkt365
The helicase FBH1 is tightly regulated by PCNA via CRL4(Cdt2)-mediated proteolysis in human cells
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6501–6513, https://doi.org/10.1093/nar/gkt397
Genomics
Identification of the nature of reading frame transitions observed in prokaryotic genomes
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6514–6530, https://doi.org/10.1093/nar/gkt274
Life without tRNAArg–adenosine deaminase TadA: evolutionary consequences of decoding the four CGN codons as arginine in Mycoplasmas and other Mollicutes
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6531–6543, https://doi.org/10.1093/nar/gkt356
Molecular Biology
In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6544–6552, https://doi.org/10.1093/nar/gkt350
The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6553–6567, https://doi.org/10.1093/nar/gkt313
Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6568–6576, https://doi.org/10.1093/nar/gkt361
The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6577–6594, https://doi.org/10.1093/nar/gkt369
Human mitochondrial disease-like symptoms caused by a reduced tRNA aminoacylation activity in flies
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6595–6608, https://doi.org/10.1093/nar/gkt402
A concept of eliminating nonhomologous recombination for scalable and safe AAV vector generation for human gene therapy
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6609–6617, https://doi.org/10.1093/nar/gkt404
IGF2BP1 promotes mesenchymal cell properties and migration of tumor-derived cells by enhancing the expression of LEF1 and SNAI2 (SLUG)
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6618–6636, https://doi.org/10.1093/nar/gkt410
RNA
The HIV-2 Rev-response element: determining secondary structure and defining folding intermediates
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6637–6649, https://doi.org/10.1093/nar/gkt353
The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6650–6663, https://doi.org/10.1093/nar/gkt337
Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6664–6673, https://doi.org/10.1093/nar/gkt352
Red5 and three nuclear pore components are essential for efficient suppression of specific mRNAs during vegetative growth of fission yeast
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6674–6686, https://doi.org/10.1093/nar/gkt363
Single-molecule study of the CUG repeat–MBNL1 interaction and its inhibition by small molecules
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6687–6697, https://doi.org/10.1093/nar/gkt330
Cell type specificity and structural determinants of IRES activity from the 5′ leaders of different HIV-1 transcripts
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6698–6714, https://doi.org/10.1093/nar/gkt358
Plant nonsense-mediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6715–6728, https://doi.org/10.1093/nar/gkt366
Structural Biology
Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6729–6738, https://doi.org/10.1093/nar/gkt321
The Fanconi anemia associated protein FAAP24 uses two substrate specific binding surfaces for DNA recognition
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6739–6749, https://doi.org/10.1093/nar/gkt354
Control of DNA minor groove width and Fis protein binding by the purine 2-amino group
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6750–6760, https://doi.org/10.1093/nar/gkt357
Crystal structure and functional insights into uracil-DNA glycosylase inhibition by phage ϕ29 DNA mimic protein p56
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6761–6773, https://doi.org/10.1093/nar/gkt395
Synthetic Biology and Chemistry
4-vinyl-substituted pyrimidine nucleosides exhibit the efficient and selective formation of interstrand cross-links with RNA and duplex DNA
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Pages 6774–6781, https://doi.org/10.1093/nar/gkt197
Corrigendum
The structural basis of actinomycin D–binding induces nucleotide flipping out, a sharp bend and a left-handed twist in CGG triplet repeats
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page 6782, https://doi.org/10.1093/nar/gkt478
Regulation of the androgen receptor by SET9-mediated methylation
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page 6783, https://doi.org/10.1093/nar/gkt422
Methods Online
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e129, https://doi.org/10.1093/nar/gkt371
Real-time solution measurement of RAD51- and RecA-mediated strand assimilation without background annealing
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e130, https://doi.org/10.1093/nar/gkt362
The telomere lengthening conundrum—artifact or biology?
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e131, https://doi.org/10.1093/nar/gkt370
r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e132, https://doi.org/10.1093/nar/gkt373
Real-time detection of DNA topological changes with a fluorescently labeled cruciform
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e133, https://doi.org/10.1093/nar/gkt413
Synthetic mammalian trigger-controlled bipartite transcription factors
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e134, https://doi.org/10.1093/nar/gkt405
Quantitative and simultaneous translational control of distinct mammalian mRNAs
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e135, https://doi.org/10.1093/nar/gkt347
PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page e136, https://doi.org/10.1093/nar/gkt372
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 41 ISSUE 13 2013
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page i, https://doi.org/10.1093/nar/gks1370
Nucleic Acids Research - Editorial Board
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page ii, https://doi.org/10.1093/nar/gks1394
Subscriptions
Nucleic Acids Research, Volume 41, Issue 13, 1 July 2013, Page iii, https://doi.org/10.1093/nar/gks1418
