Issue navigation
Volume 37, Issue 8, 1 May 2009
Survey and Summary
Current tools for the identification of miRNA genes and their targets
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2419–2433, https://doi.org/10.1093/nar/gkp145
Computational Biology
Structural basis for the sequence-dependent effects of platinum–DNA adducts
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2434–2448, https://doi.org/10.1093/nar/gkp029
PrimerHunter: a primer design tool for PCR-based virus subtype identification
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2483–2492, https://doi.org/10.1093/nar/gkp073
Engineering transcription factors with novel DNA-binding specificity using comparative genomics
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2493–2503, https://doi.org/10.1093/nar/gkp079
A feature-based approach to modeling protein–protein interaction hot spots
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2672–2687, https://doi.org/10.1093/nar/gkp132
Gene Regulation, Chromatin and Epigenetics
The chromatin remodeling factor CHD8 interacts with elongating RNA polymerase II and controls expression of the cyclin E2 gene
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2449–2460, https://doi.org/10.1093/nar/gkp101
Mutations to the histone H3 αN region selectively alter the outcome of ATP-dependent nucleosome-remodelling reactions
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2504–2513, https://doi.org/10.1093/nar/gkp114
Nucleosome eviction from MHC class II promoters controls positioning of the transcription start site
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2514–2528, https://doi.org/10.1093/nar/gkp116
The Krüppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2529–2538, https://doi.org/10.1093/nar/gkp122
Plasmodium falciparum heterochromatin protein 1 binds to tri-methylated histone 3 lysine 9 and is linked to mutually exclusive expression of var genes
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2596–2606, https://doi.org/10.1093/nar/gkp115
DNA damage induced p53 downregulates Cdc20 by direct binding to its promoter causing chromatin remodeling
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2688–2698, https://doi.org/10.1093/nar/gkp110
Reconstitution of ‘floral quartets’ in vitro involving class B and class E floral homeotic proteins
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2723–2736, https://doi.org/10.1093/nar/gkp129
Genome Integrity, Repair and Replication
Oxidative stress induces degradation of mitochondrial DNA
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2539–2548, https://doi.org/10.1093/nar/gkp100
PCNA monoubiquitylation and DNA polymerase η ubiquitin-binding domain are required to prevent 8-oxoguanine-induced mutagenesis in Saccharomyces cerevisiae
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2549–2559, https://doi.org/10.1093/nar/gkp105
An archaeal Rad54 protein remodels DNA and stimulates DNA strand exchange by RadA
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2757–2770, https://doi.org/10.1093/nar/gkp068
Genomics
Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2560–2573, https://doi.org/10.1093/nar/gkp095
No-match ORESTES explored as tumor markers
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2607–2617, https://doi.org/10.1093/nar/gkp074
Human genomic Z-DNA segments probed by the Zα domain of ADAR1
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2737–2746, https://doi.org/10.1093/nar/gkp124
Molecular Biology
Differential repression of human and mouse TERT genes during cell differentiation
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2618–2629, https://doi.org/10.1093/nar/gkp125
Tissue-specific expression of the PNZIP promoter is mediated by combinatorial interaction of different cis -elements and a novel transcriptional factor
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2630–2644, https://doi.org/10.1093/nar/gkp126
Identification and characterization of a novel testis-specific gene CKT2 , which encodes a substrate for protein kinase CK2
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2699–2711, https://doi.org/10.1093/nar/gkp094
The quadruplex r(CGG) n destabilizing cationic porphyrin TMPyP4 cooperates with hnRNPs to increase the translation efficiency of fragile X premutation mRNA
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2712–2722, https://doi.org/10.1093/nar/gkp130
Regulatory targets of quorum sensing in Vibrio cholerae: evidence for two distinct HapR-binding motifs
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2747–2756, https://doi.org/10.1093/nar/gkp121
Nucleic Acid Enzymes
MRE11 complex links RECQ5 helicase to sites of DNA damage
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2645–2657, https://doi.org/10.1093/nar/gkp147
RNA
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2461–2470, https://doi.org/10.1093/nar/gkp093
Primitive templated catalysis of a peptide ligation by self-folding RNAs
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2574–2583, https://doi.org/10.1093/nar/gkp111
Estradiol downregulates miR-21 expression and increases miR-21 target gene expression in MCF-7 breast cancer cells
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2584–2595, https://doi.org/10.1093/nar/gkp117
The RNA-binding protein HuR regulates DNA methylation through stabilization of DNMT3b mRNA
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2658–2671, https://doi.org/10.1093/nar/gkp123
Structural Biology
Natural isoflavones regulate the quadruplex–duplex competition in human telomeric DNA
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Pages 2471–2482, https://doi.org/10.1093/nar/gkp055
Methods Online
Novel method for high-throughput colony PCR screening in nanoliter-reactors
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e57, https://doi.org/10.1093/nar/gkp160
Restriction enzyme-free mutagenesis via the light regulation of DNA polymerization
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e58, https://doi.org/10.1093/nar/gkp150
Light-up properties of complexes between thiazole orange-small molecule conjugates and aptamers
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e59, https://doi.org/10.1093/nar/gkp154
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e60, https://doi.org/10.1093/nar/gkp153
Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e61, https://doi.org/10.1093/nar/gkp168
Selection of aptamers for a protein target in cell lysate and their application to protein purification
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e62, https://doi.org/10.1093/nar/gkp176
Flow cytometry for enrichment and titration in massively parallel DNA sequencing
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e63, https://doi.org/10.1093/nar/gkp188
Rapid antibody selection by mRNA display on a microfluidic chip
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e64, https://doi.org/10.1093/nar/gkp184
Real-time monitoring of aRNA production during T7 amplification to prevent the loss of sample representation during microarray hybridization sample preparation
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page e65, https://doi.org/10.1093/nar/gkp193
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 37 ISSUE 8 2009
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page i, https://doi.org/10.1093/nar/gkp396
Nucleic Acids Research
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page ii, https://doi.org/10.1093/nar/gkp395
Subscriptions
Nucleic Acids Research, Volume 37, Issue 8, 1 May 2009, Page iii, https://doi.org/10.1093/nar/gkp401
