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Carine Legrand, Francesca Tuorto, Correction to ‘RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data’, Nucleic Acids Research, Volume 50, Issue 3, 22 February 2022, Page 1794, https://doi.org/10.1093/nar/gkac031
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In Equation (2) on page 3, the count of footprints in the A-site in the numerator, should be n0,g to denote coverage, independently of the codon identity in the A-site (and not nc,0,g, which would denote specific codons). This is shown correctly in the supplementary code and in the supplementary information.
The formulas below show the former incorrect (first) and the corrected (second) Equation (2):(2)(2)
$$\begin{equation*}{\rm{codon\ usage\ }}_{\rm{c}}^{{\rm{global}}} = \frac{{\mathop \sum \nolimits_g {n_{c,0,g\ \cdot \ {\rm{codon\ usag}}{{\rm{e}}_{c,g}}}}}}{{\mathop \sum \nolimits_c \mathop \sum \nolimits_g {n_{c,0,g}}}}{\rm{\ }}\end{equation*}$$
$$\begin{equation*}{\rm{codon\ usage\ }}_{\rm{c}}^{{\rm{global}}} = \frac{{\mathop \sum \nolimits_g {n_{0,g\ \cdot \ {\rm{codon\ usag}}{{\rm{e}}_{c,g}}}}}}{{\mathop \sum \nolimits_c \mathop \sum \nolimits_g {n_{c,0,g}}}}{\rm{\ }}\end{equation*}$$
The authors apologise for this error.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.
This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact [email protected]
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