1-20 of 21
Authors: Thomas Leitner
Save search
Sort by
Journal Article

Hypermut 3: identifying specific mutational patterns in a defined nucleotide context that allows multistate characters Open Access

PDF
Zena Lapp and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf025, https://doi.org/10.1093/bioadv/vbaf025
Published: 10 February 2025
Journal Article

Identification of 2 Novel Subtypes of Hepatitis C Virus Genotype 8 and a Potential New Genotype Successfully Treated With Direct Acting Antivirals Open Access

PDF
Jean L Mbisa and others
The Journal of Infectious Diseases, Volume 230, Issue 6, 15 December 2024, Pages e1254–e1262, https://doi.org/10.1093/infdis/jiae253
Published: 08 May 2024
Journal Article

The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees Open Access

PDF
Qianying Lin and others
Molecular Biology and Evolution, Volume 41, Issue 6, June 2024, msae078, https://doi.org/10.1093/molbev/msae078
Published: 22 April 2024
Journal Article

Inferring Viral Transmission Time from Phylogenies for Known Transmission Pairs Open Access

PDF
Emma E Goldberg and others
Molecular Biology and Evolution, Volume 41, Issue 1, January 2024, msad282, https://doi.org/10.1093/molbev/msad282
Published: 27 December 2023
Journal Article

Recombination smooths the time signal disrupted by latency in within-host HIV phylogenies Open Access

PDF
Lauren A Castro and others
Virus Evolution, Volume 9, Issue 1, 2023, vead032, https://doi.org/10.1093/ve/vead032
Published: 20 May 2023
Journal Article

Where Did SARS-CoV-2 Come From? Free

PDF
Thomas Leitner and Sudhir Kumar
Molecular Biology and Evolution, Volume 37, Issue 9, September 2020, Pages 2463–2464, https://doi.org/10.1093/molbev/msaa162
Published: 06 July 2020
Journal Article

Addressing Ethical Challenges in US-Based HIV Phylogenetic Research Free

PDF
Liza Dawson and others
The Journal of Infectious Diseases, Volume 222, Issue 12, 15 December 2020, Pages 1997–2006, https://doi.org/10.1093/infdis/jiaa107
Published: 11 June 2020
Journal Article

Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers Open Access

PDF
Federica Giardina and others
International Journal of Epidemiology, Volume 48, Issue 6, December 2019, Pages 1795–1803, https://doi.org/10.1093/ije/dyz100
Published: 10 May 2019
Journal Article

The Puzzle of HIV Neutral and Selective Evolution Free

PDF
Thomas Leitner
Molecular Biology and Evolution, Volume 35, Issue 6, June 2018, Pages 1355–1358, https://doi.org/10.1093/molbev/msy089
Published: 27 April 2018
Journal Article

Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation Free

PDF
Ethan O Romero-Severson and others
Genetics, Volume 207, Issue 3, 1 November 2017, Pages 1089–1101, https://doi.org/10.1534/genetics.117.300284
Published: 13 September 2017
Journal Article

Phylodynamic Inference across Epidemic Scales Open Access

PDF
Erik M. Volz and others
Molecular Biology and Evolution, Volume 34, Issue 5, May 2017, Pages 1276–1288, https://doi.org/10.1093/molbev/msx077
Published: 14 February 2017
Journal Article

Trends of HIV-1 incidence with credible intervals in Sweden 2002–09 reconstructed using a dynamic model of within-patient IgG growth Free

PDF
Ethan Obie Romero-Severson and others
International Journal of Epidemiology, Volume 44, Issue 3, June 2015, Pages 998–1006, https://doi.org/10.1093/ije/dyv034
Published: 10 July 2015
Journal Article

PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes Free

PDF
Hyejin Yoon and Thomas Leitner
Bioinformatics, Volume 31, Issue 9, May 2015, Pages 1472–1474, https://doi.org/10.1093/bioinformatics/btu832
Published: 17 December 2014
Journal Article

Timing and Order of Transmission Events Is Not Directly Reflected in a Pathogen Phylogeny Free

PDF
Ethan Romero-Severson and others
Molecular Biology and Evolution, Volume 31, Issue 9, September 2014, Pages 2472–2482, https://doi.org/10.1093/molbev/msu179
Published: 30 May 2014
Journal Article

HIV classification using the coalescent theory Free

PDF
Ingo Bulla and others
Bioinformatics, Volume 26, Issue 11, June 2010, Pages 1409–1415, https://doi.org/10.1093/bioinformatics/btq159
Published: 16 April 2010
Journal Article

jpHMM: improving the reliability of recombination prediction in HIV-1 Open Access

PDF
Anne-Kathrin Schultz and others
Nucleic Acids Research, Volume 38, Issue 3, 1 January 2010, Page 1059, https://doi.org/10.1093/nar/gkq015
Published: 01 January 2010
Journal Article

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves Open Access

PDF
Jun-Feng Pang and others
Molecular Biology and Evolution, Volume 26, Issue 12, December 2009, Pages 2849–2864, https://doi.org/10.1093/molbev/msp195
Published: 01 September 2009
Journal Article

jpHMM: Improving the reliability of recombination prediction in HIV-1 Open Access

PDF
Anne-Kathrin Schultz and others
Nucleic Acids Research, Volume 37, Issue suppl_2, 1 July 2009, Pages W647–W651, https://doi.org/10.1093/nar/gkp371
Published: 14 May 2009
Journal Article

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1 Open Access

PDF
Ming Zhang and others
Nucleic Acids Research, Volume 34, Issue suppl_2, 1 July 2006, Pages W463–W465, https://doi.org/10.1093/nar/gkl255
Published: 01 July 2006
Journal Article

Prevalence of Drug-Resistant HIV-1 Variants in Untreated Individuals in Europe: Implications for Clinical Management Get access

PDF
Annemarie M. J. Wensing and others
The Journal of Infectious Diseases, Volume 192, Issue 6, 15 September 2005, Pages 958–966, https://doi.org/10.1086/432916
Published: 15 September 2005