Volume 12, Issue 2
February 2022
Cover image
Cover image
Zebra mussels are one of the world’s most damaging invasive species. Native to Eurasia, they have continued to spread rapidly though Europe and in recent decades through North America, causing billions of dollars in economic damage and dramatically altering the ecosystems of infested lakes and rivers. Here we report the sequencing of the zebra mussel genome which will be an important tool for invasive species research and biocontrol efforts. See McCartney et al., https://doi.org/10.1093/g3journal/jkab423. Photo courtesy of the Minnesota Aquatic Invasive Species Research Center.
EISSN 2160-1836
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Volume 12, Issue 2, February 2022
Genome Report
A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895)
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab395, https://doi.org/10.1093/g3journal/jkab395
Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab398, https://doi.org/10.1093/g3journal/jkab398
Genome assembly, annotation, and comparative analysis of the cattail Typha latifolia
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab401, https://doi.org/10.1093/g3journal/jkab401
The recombination landscapes of spiny lizards (genus Sceloporus)
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab402, https://doi.org/10.1093/g3journal/jkab402
The genome sequence of the avian vampire fly (Philornis downsi), an invasive nest parasite of Darwin’s finches in Galápagos
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab414, https://doi.org/10.1093/g3journal/jkab414
Genomic signatures and insights into host niche adaptation of the entomopathogenic fungus Metarhizium humberi
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab416, https://doi.org/10.1093/g3journal/jkab416
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab423, https://doi.org/10.1093/g3journal/jkab423
Zebra mussels are one of the world’s most damaging invasive species. Native to Eurasia, they have continued to spread rapidly though Europe and in recent decades through North America, causing billions of dollars in economic damage and dramatically altering the ecosystems of infested lakes and rivers. Here we report the sequencing of the zebra mussel genome which will be an important tool for invasive species research and biocontrol efforts.
The highly continuous reference genome of a leaf-chimeric red pineapple (Ananas comosus var. bracteatus f. tricolor) provides insights into elaboration of leaf color
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab452, https://doi.org/10.1093/g3journal/jkab452
Software and Data Resources
Development of the Wheat Practical Haplotype Graph database as a resource for genotyping data storage and genotype imputation
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab390, https://doi.org/10.1093/g3journal/jkab390
Next-generation sequencing-based bulked segregant analysis without sequencing the parental genomes
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab400, https://doi.org/10.1093/g3journal/jkab400
Gap-com: general model selection criterion for sparse undirected gene networks with nontrivial community structure
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab437, https://doi.org/10.1093/g3journal/jkab437
Database of glutamate-gated chloride (GluCl) subunits across 125 nematode species: patterns of gene accretion and sequence diversification
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab438, https://doi.org/10.1093/g3journal/jkab438
Investigation
Distinct gene expression dynamics in germ line and somatic tissue during ovariole morphogenesis in Drosophila melanogaster
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab305, https://doi.org/10.1093/g3journal/jkab305
Evolutionary dynamics of DIRS-like and Ngaro-like retrotransposons in Xenopus laevis and Xenopus tropicalis genomes
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab391, https://doi.org/10.1093/g3journal/jkab391
Genetically induced redox stress occurs in a yeast model for Roberts syndrome
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab426, https://doi.org/10.1093/g3journal/jkab426
NLR diversity and candidate fusiform rust resistance genes in loblolly pine
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab421, https://doi.org/10.1093/g3journal/jkab421
Barcoded reciprocal hemizygosity analysis via sequencing illuminates the complex genetic basis of yeast thermotolerance
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab412, https://doi.org/10.1093/g3journal/jkab412
ABHD5 frameshift deletion in Golden Retrievers with ichthyosis
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab397, https://doi.org/10.1093/g3journal/jkab397
Prediction ability of genome-wide markers in Pinus taeda L. within and between population is affected by relatedness to the training population and trait genetic architecture
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab405, https://doi.org/10.1093/g3journal/jkab405
A generic hidden Markov model for multiparent populations
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab396, https://doi.org/10.1093/g3journal/jkab396
A novel transposable element-based authentication protocol for Drosophila cell lines
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab403, https://doi.org/10.1093/g3journal/jkab403
Restricted maximum-likelihood method for learning latent variance components in gene expression data with known and unknown confounders
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab410, https://doi.org/10.1093/g3journal/jkab410
Fast neutron mutagenesis in soybean enriches for small indels and creates frameshift mutations
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab431, https://doi.org/10.1093/g3journal/jkab431
Stage-specific disruption of X chromosome expression during spermatogenesis in sterile house mouse hybrids
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab407, https://doi.org/10.1093/g3journal/jkab407
Bayesian multitrait kernel methods improve multienvironment genome-based prediction
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab406, https://doi.org/10.1093/g3journal/jkab406
DNA cytosine methylation at the lexA promoter of Escherichia coli is stationary phase specific
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab409, https://doi.org/10.1093/g3journal/jkab409
Checkpoint activation drives global gene expression changes in Drosophila nuclear lamina mutants
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab408, https://doi.org/10.1093/g3journal/jkab408
Trend, population structure, and trait mapping from 15 years of national varietal trials of UK winter wheat
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab415, https://doi.org/10.1093/g3journal/jkab415
Genetic analysis of Caenorhabditis elegans pry-1/Axin suppressors identifies genes involved in reproductive structure development, stress responses, and aging
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab430, https://doi.org/10.1093/g3journal/jkab430
Hmga2 deficiency is associated with allometric growth retardation, infertility, and behavioral abnormalities in mice
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab417, https://doi.org/10.1093/g3journal/jkab417
Genotyping-by-sequencing and genomic selection applications in hexaploid triticale
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab413, https://doi.org/10.1093/g3journal/jkab413
Evidence for the agricultural origin of resistance to multiple antimicrobials in Aspergillus fumigatus, a fungal pathogen of humans
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab427, https://doi.org/10.1093/g3journal/jkab427
Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab424, https://doi.org/10.1093/g3journal/jkab424
Evolution of the canonical sex chromosomes of the guppy and its relatives
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab435, https://doi.org/10.1093/g3journal/jkab435
A nonfunctional copy of the salmonid sex-determining gene (sdY) is responsible for the “apparent” XY females in Chinook salmon, Oncorhynchus tshawytscha
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab451, https://doi.org/10.1093/g3journal/jkab451
RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab428, https://doi.org/10.1093/g3journal/jkab428
Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab440, https://doi.org/10.1093/g3journal/jkab440
Drosophila centrocortin is dispensable for centriole duplication but contributes to centrosome separation
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab434, https://doi.org/10.1093/g3journal/jkab434
Testing the accuracy of 3D automatic landmarking via genome-wide association studies
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab443, https://doi.org/10.1093/g3journal/jkab443
Influence of model selection and data structure on the estimation of genetic parameters in honeybee populations
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab450, https://doi.org/10.1093/g3journal/jkab450
Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab399, https://doi.org/10.1093/g3journal/jkab399
Corrigendum
Corrigendum to “The crest phenotype in domestic chicken is caused by a 195 bp duplication in the intron of HOXC10”
G3 Genes|Genomes|Genetics, Volume 12, Issue 2, February 2022, jkab425, https://doi.org/10.1093/g3journal/jkab425
