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In oncology, the intersection between germline and somatic sequencing is pivotal: germline testing can reveal hereditary cancer risk, while somatic testing can direct cancer therapy, guide diagnosis, and aid disease monitoring. Somatic tumor molecular profiling uses sensitive, high-throughput technologies like next-generation sequencing to simultaneously interrogate many genes and identify tumor-specific alterations. Most somatic profiling tests are performed on tumor tissue only, which is a limitation because variants cannot be unambiguously assigned as inherited or somatic.

The introduction of plasma cell-free DNA (cfDNA) tests can potentially transform clinical care across the cancer evolution spectrum. A challenge in detecting variants in peripheral blood cfDNA is that they are derived from multiple sources. For example, cfDNA variants that are not tumor-acquired can reflect blood cell expansion in clonal hematopoiesis of indeterminate potential as well as leukocyte and healthy tissue-derived alterations either present in all cells (germline variant) or only some cells (mosaic variant).

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