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Journal Article

“Neuropathological function estimations”: a user-friendly module for analyzing neural activity in neurological disorders

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Alessia M Panait and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf083, https://doi.org/10.1093/bioadv/vbaf083
Published: 09 April 2025
Journal Article

LipidSigR: a R-based solution for integrated lipidomics data analysis and visualization

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Chia-Hsin Liu and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf047, https://doi.org/10.1093/bioadv/vbaf047
Published: 10 March 2025
Journal Article

DataSHIELD: mitigating disclosure risk in a multi-site federated analysis platform

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Demetris Avraam and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf046, https://doi.org/10.1093/bioadv/vbaf046
Published: 10 March 2025
Journal Article

Pandora: a tool to estimate dimensionality reduction stability of genotype data

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Julia Haag and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf040, https://doi.org/10.1093/bioadv/vbaf040
Published: 03 March 2025
Journal Article

getENRICH: a tool for the gene and pathway enrichment analysis of non-model organisms

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Ajay Bhatia and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf023, https://doi.org/10.1093/bioadv/vbaf023
Published: 07 February 2025
Journal Article

FAIRification of the DMRichR pipeline: advancing epigenetic research on environmental and evolutionary model organisms

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Wassim Salam and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf024, https://doi.org/10.1093/bioadv/vbaf024
Published: 06 February 2025
Journal Article

Sequali: efficient and comprehensive quality control of short- and long-read sequencing data

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Ruben H P Vorderman
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf010, https://doi.org/10.1093/bioadv/vbaf010
Published: 29 January 2025
Journal Article

A bioinformatician, computer scientist, and geneticist lead bioinformatic tool development—which one is better?

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Paul P Gardner
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf011, https://doi.org/10.1093/bioadv/vbaf011
Published: 29 January 2025
Journal Article

Protomix: a Python package for 1H-NMR metabolomics data preprocessing

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Mohammed Zniber and others
Bioinformatics Advances, Volume 5, Issue 1, 2025, vbae192, https://doi.org/10.1093/bioadv/vbae192
Published: 27 November 2024
Journal Article

blast2galaxy: a CLI and Python API for BLAST+ and DIAMOND searches on Galaxy servers

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Patrick König and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae185, https://doi.org/10.1093/bioadv/vbae185
Published: 22 November 2024
Journal Article

LUKB: preparing local UK Biobank data for analysis

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Xiangnan Li and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae176, https://doi.org/10.1093/bioadv/vbae176
Published: 09 November 2024
Journal Article

TransAnnot—a fast transcriptome annotation pipeline

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Mariia Zelenskaia and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae152, https://doi.org/10.1093/bioadv/vbae152
Published: 22 October 2024
Journal Article

ULTRA-effective labeling of tandem repeats in genomic sequence

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Daniel R Olson and Travis J Wheeler
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae149, https://doi.org/10.1093/bioadv/vbae149
Published: 09 October 2024
Journal Article

splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

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Gregor Rot and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae121, https://doi.org/10.1093/bioadv/vbae121
Published: 17 August 2024
Journal Article

Introducing field-programmable gate arrays in genotype phasing and imputation

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Lars Wienbrandt and David Ellinghaus
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae114, https://doi.org/10.1093/bioadv/vbae114
Published: 30 July 2024
Journal Article

TWCOM: an R package for inference of cell–cell communication on spatially resolved transcriptomics data

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Dongyuan Wu and Susmita Datta
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae101, https://doi.org/10.1093/bioadv/vbae101
Published: 16 July 2024
Journal Article

consICA: an R package for robust reference-free deconvolution of multi-omics data

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Maryna Chepeleva and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae102, https://doi.org/10.1093/bioadv/vbae102
Published: 13 July 2024
Journal Article

Demultiplexing of single-cell RNA-sequencing data using interindividual variation in gene expression

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Isar Nassiri and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae085, https://doi.org/10.1093/bioadv/vbae085
Published: 08 June 2024
Journal Article

CellsFromSpace: a fast, accurate, and reference-free tool to deconvolve and annotate spatially distributed omics data

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Corentin Thuilliez and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae081, https://doi.org/10.1093/bioadv/vbae081
Published: 30 May 2024
Journal Article

scX: a user-friendly tool for scRNAseq exploration

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Tomás V Waichman and others
Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae062, https://doi.org/10.1093/bioadv/vbae062
Published: 02 May 2024