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Volume 27, Issue 1, January 2011
ORIGINAL PAPERS
GENOME ANALYSIS
A variable selection method for genome-wide association studies
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 1–8, https://doi.org/10.1093/bioinformatics/btq600
GAMES identifies and annotates mutations in next-generation sequencing projects
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 9–13, https://doi.org/10.1093/bioinformatics/btq603
Identification of human-specific transcript variants induced by DNA insertions in the human genome
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 14–21, https://doi.org/10.1093/bioinformatics/btq612
SEQUENCE ANALYSIS
SPHINX—an algorithm for taxonomic binning of metagenomic sequences
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 22–30, https://doi.org/10.1093/bioinformatics/btq608
A performance enhanced PSI-BLAST based on hybrid alignment
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 31–37, https://doi.org/10.1093/bioinformatics/btq621
PHYLOGENETICS
Assigning duplication events to relative temporal scales in genome-wide studies
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 38–45, https://doi.org/10.1093/bioinformatics/btq609
STRUCTURAL BIOINFORMATICS
Generation of a consensus protein domain dictionary
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 46–54, https://doi.org/10.1093/bioinformatics/btq625
A dynamic data structure for flexible molecular maintenance and informatics
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 55–62, https://doi.org/10.1093/bioinformatics/btq627
GENE EXPRESSION
A stochastic expectation and maximization algorithm for detecting quantitative trait-associated genes
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 63–69, https://doi.org/10.1093/bioinformatics/btq558
Generalized random set framework for functional enrichment analysis using primary genomics datasets
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 70–77, https://doi.org/10.1093/bioinformatics/btq593
Biological impact of missing-value imputation on downstream analyses of gene expression profiles
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 78–86, https://doi.org/10.1093/bioinformatics/btq613
Improved performance on high-dimensional survival data by application of Survival-SVM
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 87–94, https://doi.org/10.1093/bioinformatics/btq617
GENETICS AND POPULATION ANALYSIS
dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 95–102, https://doi.org/10.1093/bioinformatics/btq615
SYSTEMS BIOLOGY
Inverse perturbation for optimal intervention in gene regulatory networks
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 103–110, https://doi.org/10.1093/bioinformatics/btq605
Identification of protein complexes from co-immunoprecipitation data
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 111–117, https://doi.org/10.1093/bioinformatics/btq652
DATA AND TEXT MINING
Optimized data fusion for K-means Laplacian clustering
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 118–126, https://doi.org/10.1093/bioinformatics/btq569
APPLICATIONS NOTE
GENOME ANALYSIS
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 127–129, https://doi.org/10.1093/bioinformatics/btq619
SEQUENCE ANALYSIS
SAMStat: monitoring biases in next generation sequencing data
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 130–131, https://doi.org/10.1093/bioinformatics/btq614
STRUCTURAL BIOINFORMATICS
Protein Peeling 3D: new tools for analyzing protein structures
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 132–133, https://doi.org/10.1093/bioinformatics/btq610
GENETICS AND POPULATION ANALYSIS
Automated construction and testing of multi-locus gene–gene associations
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 134–136, https://doi.org/10.1093/bioinformatics/btq616
SYSTEMS BIOLOGY
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 137–139, https://doi.org/10.1093/bioinformatics/btq594
QuACN: an R package for analyzing complex biological networks quantitatively
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 140–141, https://doi.org/10.1093/bioinformatics/btq606
von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 142–143, https://doi.org/10.1093/bioinformatics/btq607
DATA AND TEXT MINING
ASSIMILATOR: a new tool to inform selection of associated genetic variants for functional studies
Bioinformatics, Volume 27, Issue 1, January 2011, Pages 144–146, https://doi.org/10.1093/bioinformatics/btq611
