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Section: Special Issue Papers
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Journal Article

Mining the pharmacogenomics literature—a survey of the state of the art

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Udo Hahn and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 460–494, https://doi.org/10.1093/bib/bbs018
Published: 24 July 2012
Journal Article

Reverse engineering biomolecular systems using −omic data: challenges, progress and opportunities

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Chang F. Quo and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 430–445, https://doi.org/10.1093/bib/bbs026
Published: 24 July 2012
Journal Article

Network biology methods integrating biological data for translational science

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Gurkan Bebek and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 446–459, https://doi.org/10.1093/bib/bbr075
Published: 05 March 2012
Journal Article

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life

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James A. Foster and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 420–429, https://doi.org/10.1093/bib/bbr080
Published: 27 February 2012
Journal Article

Identification of aberrant pathways and network activities from high-throughput data

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Jinlian Wang and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 406–419, https://doi.org/10.1093/bib/bbs001
Published: 27 January 2012
Journal Article

Bioinformatics for personal genome interpretation

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Emidio Capriotti and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 495–512, https://doi.org/10.1093/bib/bbr070
Published: 13 January 2012
Journal Article

Multiscale modeling of macromolecular biosystems

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Samuel C. Flores and others
Briefings in Bioinformatics, Volume 13, Issue 4, July 2012, Pages 395–405, https://doi.org/10.1093/bib/bbr077
Published: 06 January 2012
Journal Article

myMIR: a genome-wide microRNA targets identification and annotation tool

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Dario Corrada and others
Briefings in Bioinformatics, Volume 12, Issue 6, November 2011, Pages 588–600, https://doi.org/10.1093/bib/bbr062
Published: 22 October 2011
Journal Article

Tools and collaborative environments for bioinformatics research

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Paolo Romano and others
Briefings in Bioinformatics, Volume 12, Issue 6, November 2011, Pages 549–561, https://doi.org/10.1093/bib/bbr055
Published: 07 October 2011
Journal Article

Knowledge sharing and collaboration in translational research, and the DC-THERA Directory

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Andrea Splendiani and others
Briefings in Bioinformatics, Volume 12, Issue 6, November 2011, Pages 562–575, https://doi.org/10.1093/bib/bbr051
Published: 03 October 2011
Journal Article

Models, algorithms and programs for phylogeny reconciliation

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Jean-Philippe Doyon and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 392–400, https://doi.org/10.1093/bib/bbr045
Published: 21 September 2011
Journal Article

RNA tertiary structure prediction with ModeRNA

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Magdalena Rother and others
Briefings in Bioinformatics, Volume 12, Issue 6, November 2011, Pages 601–613, https://doi.org/10.1093/bib/bbr050
Published: 06 September 2011
Journal Article

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

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Pascale Gaudet and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 449–462, https://doi.org/10.1093/bib/bbr042
Published: 27 August 2011
Journal Article

Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees

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Brigitte Boeckmann and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 423–435, https://doi.org/10.1093/bib/bbr034
Published: 07 July 2011
Journal Article

Mining small-molecule screens to repurpose drugs

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S. Joshua Swamidass
Briefings in Bioinformatics, Volume 12, Issue 4, July 2011, Pages 327–335, https://doi.org/10.1093/bib/bbr028
Published: 29 June 2011
Journal Article

Literature mining, ontologies and information visualization for drug repurposing

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Christos Andronis and others
Briefings in Bioinformatics, Volume 12, Issue 4, July 2011, Pages 357–368, https://doi.org/10.1093/bib/bbr005
Published: 28 June 2011
Journal Article

Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes)

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Christophe Dessimoz and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 474–484, https://doi.org/10.1093/bib/bbr038
Published: 28 June 2011
Journal Article

Ortholog identification in the presence of domain architecture rearrangement

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Kimmen Sjölander and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 413–422, https://doi.org/10.1093/bib/bbr036
Published: 28 June 2011
Journal Article

Positional orthology: putting genomic evolutionary relationships into context

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Colin N. Dewey
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 401–412, https://doi.org/10.1093/bib/bbr040
Published: 24 June 2011
Journal Article

Exploiting drug–disease relationships for computational drug repositioning

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Joel T. Dudley and others
Briefings in Bioinformatics, Volume 12, Issue 4, July 2011, Pages 303–311, https://doi.org/10.1093/bib/bbr013
Published: 20 June 2011