1-20 of 34
Authors: Fuyi Li
Journal Article
Graph contrastive learning as a versatile foundation for advanced scRNA-seq data analysis
Briefings in Bioinformatics, Volume 25, Issue 6, November 2024, bbae558, https://doi.org/10.1093/bib/bbae558
Published: 01 November 2024
Journal Article
scDFN: enhancing single-cell RNA-seq clustering with deep fusion networks
Briefings in Bioinformatics, Volume 25, Issue 6, November 2024, bbae486, https://doi.org/10.1093/bib/bbae486
Published: 05 October 2024
Journal Article
Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects
Briefings in Bioinformatics, Volume 25, Issue 5, September 2024, bbae446, https://doi.org/10.1093/bib/bbae446
Published: 13 September 2024
Journal Article
Variable calling of m6A and associated features in databases: a guide for end-users
Briefings in Bioinformatics, Volume 25, Issue 5, September 2024, bbae434, https://doi.org/10.1093/bib/bbae434
Published: 11 September 2024
Journal Article
ProsperousPlus: a one-stop and comprehensive platform for accurate protease-specific substrate cleavage prediction and machine-learning model construction
Briefings in Bioinformatics, Volume 24, Issue 6, November 2023, bbad372, https://doi.org/10.1093/bib/bbad372
Published: 24 October 2023
Journal Article
iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities
Briefings in Bioinformatics, Volume 24, Issue 4, July 2023, bbad240, https://doi.org/10.1093/bib/bbad240
Published: 27 June 2023
Journal Article
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters
Briefings in Bioinformatics, Volume 24, Issue 4, July 2023, bbad209, https://doi.org/10.1093/bib/bbad209
Published: 08 June 2023
Journal Article
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species
Briefings in Bioinformatics, Volume 24, Issue 3, May 2023, bbad170, https://doi.org/10.1093/bib/bbad170
Published: 06 May 2023
Journal Article
ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning
Briefings in Bioinformatics, Volume 24, Issue 2, March 2023, bbad063, https://doi.org/10.1093/bib/bbad063
Published: 04 March 2023
Journal Article
VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants
Briefings in Bioinformatics, Volume 24, Issue 1, January 2023, bbac535, https://doi.org/10.1093/bib/bbac535
Published: 18 December 2022
Journal Article
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations
Briefings in Bioinformatics, Volume 23, Issue 6, November 2022, bbac467, https://doi.org/10.1093/bib/bbac467
Published: 05 November 2022
Journal Article
RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins
Briefings in Bioinformatics, Volume 23, Issue 4, July 2022, bbac215, https://doi.org/10.1093/bib/bbac215
Published: 02 June 2022
Journal Article
ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning
Briefings in Bioinformatics, Volume 23, Issue 2, March 2022, bbac031, https://doi.org/10.1093/bib/bbac031
Published: 17 February 2022
Journal Article
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction
Briefings in Bioinformatics, Volume 23, Issue 2, March 2022, bbab551, https://doi.org/10.1093/bib/bbab551
Published: 11 January 2022
Journal Article
Positive-unlabeled learning in bioinformatics and computational biology: a brief review
Briefings in Bioinformatics, Volume 23, Issue 1, January 2022, bbab461, https://doi.org/10.1093/bib/bbab461
Published: 03 November 2021
Journal Article
Porpoise: a new approach for accurate prediction of RNA pseudouridine sites
Briefings in Bioinformatics, Volume 22, Issue 6, November 2021, bbab245, https://doi.org/10.1093/bib/bbab245
Published: 05 July 2021
Journal Article
Assessing the performance of computational predictors for estimating protein stability changes upon missense mutations
Briefings in Bioinformatics, Volume 22, Issue 6, November 2021, bbab184, https://doi.org/10.1093/bib/bbab184
Published: 31 May 2021
Journal Article
Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides
Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbab083, https://doi.org/10.1093/bib/bbab083
Published: 27 March 2021
Journal Article
Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules
Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbaa415, https://doi.org/10.1093/bib/bbaa415
Published: 18 January 2021
Journal Article
Large-scale comparative review and assessment of computational methods for anti-cancer peptide identification
Briefings in Bioinformatics, Volume 22, Issue 4, July 2021, bbaa312, https://doi.org/10.1093/bib/bbaa312
Published: 15 December 2020
