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Correction: Insights from analyses of low complexity regions with canonical methods for protein sequence comparison, Briefings in Bioinformatics, Volume 23, Issue 6, November 2022, bbac474, https://doi.org/10.1093/bib/bbac474
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Issue Section:
Correction
Briefings in Bioinformatics, Volume 23, Issue 5, September 2022, bbac299, doi: 10.1093/bib/bbac299
In the originally published version of this manuscript, there were problems in the formatting and alignments in data within Table 2 and Table 3.
Table 2 should read:
Table 2
BLAST can give ambiguous results; longer homopolymer of serine has higher e-value than shorter homopolymer of glutamine even though both homopolymers are aligned without penalty. Table shows perfect alignments collected from BLAST. It compares proteins from krueppel C2H2-type zinc-finger protein family (upper sequences) with proteins from other families (bottom sequences)
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
Table 2
BLAST can give ambiguous results; longer homopolymer of serine has higher e-value than shorter homopolymer of glutamine even though both homopolymers are aligned without penalty. Table shows perfect alignments collected from BLAST. It compares proteins from krueppel C2H2-type zinc-finger protein family (upper sequences) with proteins from other families (bottom sequences)
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
Instead of
Table 2
BLAST can give ambiguous results; longer homopolymer of serine has higher e-value than shorter homopolymer of glutamine even though both homopolymers are aligned without penalty. Table shows perfect alignments collected from BLAST. It compares proteins from krueppel C2H2-type zinc-finger protein family (upper sequences) with proteins from other families (bottom sequences)
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
Table 2
BLAST can give ambiguous results; longer homopolymer of serine has higher e-value than shorter homopolymer of glutamine even though both homopolymers are aligned without penalty. Table shows perfect alignments collected from BLAST. It compares proteins from krueppel C2H2-type zinc-finger protein family (upper sequences) with proteins from other families (bottom sequences)
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Zinc finger protein 865 (P0CJ78) | SSSSSSSSSSSSSSSSSSSSSSSSS (92 - 116) | 1,10E-17 |
| midline | SSSSSSSSSSSSSSSSSSSSSSSSS | ||
| ADP-ribosylation factor-like protein 6-interacting protein 4 (Q66PJ3) | SSSSSSSSSSSSSSSSSSSSSSSSS (257 - 281) | ||
| 2 | Zinc finger protein rotund (Q9VI93) | QQQQQQQQQQQQQQQQQQQQQQQ (739 - 761) | 1,40E-23 |
| midline | QQQQQQQQQQQQQQQQQQQQQQQ | ||
| Ataxin-2 (Q99700) | QQQQQQQQQQQQQQQQQQQQQQQ (165 - 187) | ||
| 3 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 3,61E-10 |
| midline | PPPPPPPPPPPP | ||
| Inactive histone-lysine N-methyltransferase 2E (Q3UG20) | PPPPPPPPPPPP (1719 - 1730) | ||
| 4 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 1,84E-09 |
| midline | PPPPPPPPPPPP | ||
| Translation initiation factor IF-2 (Q2G5E7) | AAPTAAPAAAATPAPTPVAPPPPPPPPPPPP (53 - 83) | ||
| 5 | Zinc finger homeobox protein 4 (Q86UP3) | PPPPPPPPPPPP (3112 - 3123) | 7,75E-10 |
| midline | PPPPPPPPPPPP | ||
| Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Q64467) | PPPPPPPPPPPPPPPPPPPP (83 - 99) |
Table 3 should read:
Table 3
HHblits found more distant similarities. We selected alignment results where one of the sequence is from chloroplast sensor kinase, chloroplastic protein. The midline, ‘—’ mark indicates score above 1.5, while ‘+’ indicates score between 0.5 and 1.5
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
Table 3
HHblits found more distant similarities. We selected alignment results where one of the sequence is from chloroplast sensor kinase, chloroplastic protein. The midline, ‘—’ mark indicates score above 1.5, while ‘+’ indicates score between 0.5 and 1.5
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
Instead of
Table 3
HHblits found more distant similarities. We selected alignment results where one of the sequence is from chloroplast sensor kinase, chloroplastic protein. The midline, ‘|’ mark indicates score above 1.5, while ‘+’ indicates score between 0.5 and 1.5
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
Table 3
HHblits found more distant similarities. We selected alignment results where one of the sequence is from chloroplast sensor kinase, chloroplastic protein. The midline, ‘|’ mark indicates score above 1.5, while ‘+’ indicates score between 0.5 and 1.5
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
| # . | Protein name . | Alignments . | e-value . |
|---|---|---|---|
| 1 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.6e-15 |
| midline | ||||+|||||| | ||
| Lamellipodin (Q70E73) | SLSSSSIKSGSSSSS (527 - 541) | ||
| 2 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 3.2e-13 |
| midline | ||||||||||| | ||
| E3 ubiquitin-protein ligase UBR4 (Q5T4S7) | AALAASSGSSSASSSSAPVAASS (3333 - 3355) | ||
| 3 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 5.9e-15 |
| midline | ||||+|||||| | ||
| Dual specificity tyrosine-phosphorylation-regulated kinase 1B (Q9Y463) | SSSTASSISSSGGSSGSSS (459 - 477) | ||
| 4 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 1.4e-14 |
| midline | ||||||||||| | ||
| Nucleolar and coiled-body phosphoprotein 1 (Q14978) | DSSSDSDSSSSEEEEE (467 - 482) | ||
| 5 | Chloroplast sensor kinase, chloroplastic (F4HVG8) | SSSSSSSSSSS (39 - 49) | 9.6e-13 |
| midline | |||||+||||| | ||
| Krueppel-like factor 16 (Q9BXK1) | PGGASPASSSSAASSPSSG (94 - 112) |
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