Co-expression modules reveal differentiation processes in a continuum of developing T cells. (A) UMAP plot of T cell differentiation stages from human thymus. Cells are colored by the cell types defined in the original study. (B) Evolution of the expression of gene modules across the differentiation of T cells. The top graph shows modules M03, M06, M08, and M11 related to cellular functions, and the bottom graph shows the modules M13, M23, and M28 related to known differentiation stages. (C) UMAP plot colored by AUCell scores for co-expression modules found by SciGeneX.