Figure 3.
![(a–f) Initial and final relative log-likelihood results of IQ-TREE-2 initiated with trees generated by NJ, FNJ, HNJ, and SNJ. (g) Transfer distances between the final and reference trees. (h) Quartet distances between the final and reference trees. (i) Total [starting tree construction + nearest neighbor interchange (NNI) operations] elapsed time results. SNJ results are averaged over different seeds. Error bars show standard error. Note the scale multipliers in the time and log-likelihood plots.](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/bioinformatics/40/12/10.1093_bioinformatics_btae701/1/btae701f3.jpeg?Expires=1750208400&Signature=VAj4I1g~Nt4tUacUSRj~NuipEq7v1isiONLWEv81HROZnyTbn~sEbpGuit8lHi3MjAZ~bcBYEaz3bCkMyGxwauJr34Dz0LxzKUilFd4j~JtGtT0DgdvoA69jNTNbLI6fQIlT6PYYYABk3YsI8TRGHivQGj7Y2i1nacqITr7goCOBTaxYDxh8epZTs5gjzRLWVq~9dPwTl6Um-tnjC3TUJgqKT8CtmxBttCXNC~8eZGiR3KAA3X71s7k8PuYUfdYe1-SxUZNyjoelt0V9a3df8hVLKbdCuSEGZW8ulZHz4Pw6IZqR-XS07uYLCkN9sFYBQ6sgJ~rQIrcM1XdMTOCtFA__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA)
(a–f) Initial and final relative log-likelihood results of IQ-TREE-2 initiated with trees generated by NJ, FNJ, HNJ, and SNJ. (g) Transfer distances between the final and reference trees. (h) Quartet distances between the final and reference trees. (i) Total [starting tree construction + nearest neighbor interchange (NNI) operations] elapsed time results. SNJ results are averaged over different seeds. Error bars show standard error. Note the scale multipliers in the time and log-likelihood plots.
