Figure 3.
Relationship between pairwise genetic and Euclidean distances in embeddings of early (2016–2018) influenza H3N2 HA sequences by PCA (upper left), MDS (upper right), t-SNE (lower left), and UMAP (lower right). Each boxplot represents the distribution of pairwise Euclidean distances at a given genetic distance. Panel titles include Pearson’s R2 values and linear regression coefficients between the plotted distances.