Figure 3.
Relationship between pairwise genetic and Euclidean distances in embeddings of early (2016–2018) influenza H3N2 HA sequences by PCA (upper left), MDS (upper right), t-SNE (lower left), and UMAP (lower right). Each boxplot represents the distribution of pairwise Euclidean distances at a given genetic distance. Panel titles include Pearson’s R2 values and linear regression coefficients between the plotted distances.

Relationship between pairwise genetic and Euclidean distances in embeddings of early (2016–2018) influenza H3N2 HA sequences by PCA (upper left), MDS (upper right), t-SNE (lower left), and UMAP (lower right). Each boxplot represents the distribution of pairwise Euclidean distances at a given genetic distance. Panel titles include Pearson’s R2 values and linear regression coefficients between the plotted distances.

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