Figure 5.
Cell-type-specific gene expression of bolting-related genes. Using the high-resolution imputing function in CIBERSORTx, we predicted cell-type-specific expression of genes that were differentially expressed in bolted/unbolted plants. In this study, we show the results for the genes that have higher expression levels in bolted plants, with the inverse gene set shown in Supplementary Fig. S9. A) The z-score of the expression of these genes in the bulk RNA-seq experiment (Redmond et al. 2023), grouped by the cell type in which they were predicted to be expressed and ordered by pseudotime. B) The cell-type assignment, with red indicating that a gene is expected to be found in that cell type. C) The z-score of the mean expression of these genes in the scRNA-seq dataset (Procko et al. 2022).

Cell-type-specific gene expression of bolting-related genes. Using the high-resolution imputing function in CIBERSORTx, we predicted cell-type-specific expression of genes that were differentially expressed in bolted/unbolted plants. In this study, we show the results for the genes that have higher expression levels in bolted plants, with the inverse gene set shown in Supplementary Fig. S9. A) The z-score of the expression of these genes in the bulk RNA-seq experiment (Redmond et al. 2023), grouped by the cell type in which they were predicted to be expressed and ordered by pseudotime. B) The cell-type assignment, with red indicating that a gene is expected to be found in that cell type. C) The z-score of the mean expression of these genes in the scRNA-seq dataset (Procko et al. 2022).

Close
This Feature Is Available To Subscribers Only

Sign In or Create an Account

Close

This PDF is available to Subscribers Only

View Article Abstract & Purchase Options

For full access to this pdf, sign in to an existing account, or purchase an annual subscription.

Close